reapr binary package in Ubuntu Noble riscv64

 REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
 paired end reads, without the use of a reference genome for comparison. It can
 be used in any stage of an assembly pipeline to automatically break incorrect
 scaffolds and flag other errors in an assembly for manual inspection. It
 reports mis-assemblies and other warnings, and produces a new broken assembly
 based on the error calls.
 .
 The software requires as input an assembly in FASTA format and paired reads
 mapped to the assembly in a BAM file. Mapping information such as the fragment
 coverage and insert size distribution is analysed to locate mis-assemblies.
 REAPR works best using mapped read pairs from a large insert library (at least
 1000bp). Additionally, if a short insert Illumina library is also available,
 REAPR can combine this with the large insert library in order to score each
 base of the assembly.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2024-04-04 20:04:35 UTC Published Ubuntu Noble riscv64 release universe science Optional 1.0.18+dfsg-5ubuntu2
  • Published
  • Copied from ubuntu noble-proposed riscv64 in Primary Archive for Ubuntu
  Deleted Ubuntu Noble riscv64 proposed universe science Optional 1.0.18+dfsg-5ubuntu2
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  Deleted Ubuntu Noble riscv64 updates universe science Optional 1.0.18+dfsg-5build2
  • Removal requested .
  • Deleted by Brian Murray

    superseded by release

  • Published
  • Copied from ubuntu lunar-proposed riscv64 in Primary Archive for Ubuntu
  2024-04-04 20:13:42 UTC Superseded Ubuntu Noble riscv64 release universe science Optional 1.0.18+dfsg-5ubuntu1
  • Removed from disk .
  • Removal requested .
  • Superseded by riscv64 build of reapr 1.0.18+dfsg-5ubuntu2 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu noble-proposed riscv64 in Primary Archive for Ubuntu
  2024-04-06 12:10:12 UTC Deleted Ubuntu Noble riscv64 proposed universe science Optional 1.0.18+dfsg-5ubuntu1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  2024-03-23 18:03:28 UTC Superseded Ubuntu Noble riscv64 proposed universe science Optional 1.0.18+dfsg-5build3
  • Removed from disk .
  • Removal requested .
  • Superseded by riscv64 build of reapr 1.0.18+dfsg-5ubuntu1 in ubuntu noble PROPOSED
  • Published
  2024-03-29 03:56:46 UTC Superseded Ubuntu Noble riscv64 release universe science Optional 1.0.18+dfsg-5build2
  • Removal requested .
  • Superseded by riscv64 build of reapr 1.0.18+dfsg-5ubuntu1 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu lunar-proposed riscv64 in Primary Archive for Ubuntu

Source package