minimap2 binary package in Ubuntu Noble arm64
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-
genome alignment between two closely related species with divergence
below ~15%.
.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2024-04-07 09:12:19 UTC | Published | Ubuntu Noble arm64 | release | universe | science | Optional | 2.26+dfsg-1build1 | ||
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Deleted | Ubuntu Noble arm64 | proposed | universe | science | Optional | 2.26+dfsg-1build1 | |||
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2024-04-08 18:10:16 UTC | Deleted | Ubuntu Noble arm64 | updates | universe | science | Optional | 2.24+dfsg-3build2 | ||
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2024-03-31 22:27:09 UTC | Superseded | Ubuntu Noble arm64 | proposed | universe | science | Optional | 2.26+dfsg-1 | ||
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2024-04-07 09:12:42 UTC | Superseded | Ubuntu Noble arm64 | release | universe | science | Optional | 2.24+dfsg-3build2 | ||
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2024-04-08 18:10:16 UTC | Deleted | Ubuntu Noble arm64 | proposed | universe | science | Optional | 2.24+dfsg-3build2 | ||
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2023-11-15 07:42:05 UTC | Superseded | Ubuntu Noble arm64 | release | universe | science | Optional | 2.24+dfsg-3build1 | ||
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