r-bioc-tfbstools 1.40.0+dfsg-1 (amd64 binary) in ubuntu noble
TFBSTools is a package for the analysis and manipulation of
transcription factor binding sites. It includes matrices conversion
between Position Frequency Matirx (PFM), Position Weight Matirx (PWM)
and Information Content Matrix (ICM). It can also scan putative TFBS
from sequence/alignment, query JASPAR database and provides a wrapper of
de novo motif discovery software.
Details
- Package version:
- 1.40.0+dfsg-1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of r-bioc-tfbstools 1.40.0+dfsg-1 in ubuntu noble PROPOSED produced
these files:
- r-bioc-tfbstools_1.40.0+dfsg-1_amd64.deb (979.1 KiB)
Package relationships
- Depends on:
- libc6 (>= 2.4)
- r-api-4.0
- r-api-bioc-3.18
- r-bioc-biobase (>= 2.28)
- r-bioc-biocgenerics (>= 0.14.0)
- r-bioc-biocparallel (>= 1.2.21)
- r-bioc-biostrings (>= 2.36.4)
- r-bioc-bsgenome (>= 1.36.3)
- r-bioc-cner (>= 1.4.0)
- r-bioc-dirichletmultinomial (>= 1.10.0)
- r-bioc-genomeinfodb (>= 1.6.1)
- r-bioc-genomicranges (>= 1.20.6)
- r-bioc-iranges (>= 2.2.7)
- r-bioc-rtracklayer (>= 1.28.10)
- r-bioc-s4vectors (>= 0.9.25)
- r-bioc-seqlogo (>= 1.34.0)
- r-bioc-xvector (>= 0.8.0)
- r-cran-catools (>= 1.17.1)
- r-cran-dbi (>= 0.6)
- r-cran-gtools (>= 3.5.0)
- r-cran-rsqlite (>= 1.0.0)
- r-cran-tfmpvalue (>= 0.0.5)
- r-cran-xml (>= 3.98-1.3)