r-bioc-isoformswitchanalyzer 2.2.0+ds-1 (amd64 binary) in ubuntu noble
Isoform Switches with Functional Consequences from both short- and
long-read RNA-seq data. Analysis of alternative splicing and
isoform switches with predicted functional consequences (e.g.
gain/loss of protein domains etc.) from quantification of all
types of RNASeq by tools such as Kallisto, Salmon, StringTie,
Cufflinks/Cuffdiff etc.
Details
- Package version:
- 2.2.0+ds-1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of r-bioc-isoformswitchanalyzer 2.2.0+ds-1 in ubuntu noble PROPOSED produced
these files:
Package relationships
- Depends on:
- r-api-4.0
- r-api-bioc-3.18
- r-bioc-biobase
- r-bioc-biocgenerics
- r-bioc-biocparallel
- r-bioc-biostrings (>= 2.50.0)
- r-bioc-bsgenome
- r-bioc-dexseq
- r-bioc-edger
- r-bioc-genomeinfodb
- r-bioc-genomicranges
- r-bioc-iranges
- r-bioc-limma
- r-bioc-pfamanalyzer
- r-bioc-rtracklayer
- r-bioc-s4vectors
- r-bioc-saturn (>= 1.7.0)
- r-bioc-summarizedexperiment
- r-bioc-sva
- r-bioc-tximeta (>= 1.7.12)
- r-bioc-tximport (>= 1.7.1)
- r-bioc-xvector
- r-cran-dbi
- r-cran-dplyr
- r-cran-futile.logger
- r-cran-ggplot2 (>= 3.3.5)
- r-cran-gridextra
- r-cran-magrittr
- r-cran-plyr
- r-cran-rcolorbrewer
- r-cran-rcurl
- r-cran-readr
- r-cran-reshape2
- r-cran-stringr
- r-cran-tibble
- r-cran-tidyr
- r-cran-venndiagram
- Suggests: