maffilter 1.3.1+dfsg-5build3 (amd64 binary) in ubuntu noble
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
Details
- Package version:
- 1.3.1+dfsg-5build3
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
- maffilter_1.3.1+dfsg-5build3_amd64.deb (274.3 KiB)
Package relationships
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