ariba 2.14.6+ds-5build1 (amd64 binary) in ubuntu noble
ARIBA is a tool that identifies antibiotic resistance genes by running local
assemblies.
The input is a FASTA file of reference genes and paired sequencing reads. ARIBA
reports which of the reference genes were found, plus detailed information on
the quality of the assemblies and any variants between the sequencing reads
and the reference genes.
Details
- Package version:
- 2.14.6+ds-5build1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of ariba 2.14.6+ds-5build1 in ubuntu lunar PROPOSED produced
these files:
- ariba_2.14.6+ds-5build1_amd64.deb (1.9 MiB)
Package relationships
- Depends on:
- bowtie2
- cd-hit
- fastaq
- libc6 (>= 2.14)
- libfml0 (>= 0.1)
- libgcc-s1 (>= 3.3.1)
- libminimap0 (>= 0.2)
- libstdc++6 (>= 5.2)
- mash
- mummer
- python3 (<< 3.12)
- python3 (>= 3.11~)
- python3
- python3-biopython
- python3-bs4 (>= 4.1.0)
- python3-dendropy
- python3-matplotlib
- python3-pymummer
- python3-pysam
- python3-tk
- zlib1g (>= 1:1.1.4)
- Suggests: