Binary package “mindthegap-examples” in ubuntu noble
optional scripts and example resources for mindthegap
Designed to call insertions of any size, whether they are novel or
duplicated, homozygous or heterozygous in the donor genome. it takes
as input a set of reads and a reference genome. It outputs two sets
of FASTA sequences: one is the set of breakpoints of detection
insertion sites, the other is the set of assembled insertions for
each breakpoint. MindTheGap can also be used as a genome assembly
finishing tool. It can fill the gap between a set of input contigs
without any a priori on their relative order and orientation. It
outputs the results in gfa file. Please note that this package is
meant to accommodate the mindthegap package and only acts as example
to how this package can be utilised.
Source package
Published versions
- mindthegap-examples 2.3.0-2 in amd64 (Release)
- mindthegap-examples 2.3.0-3build2 in amd64 (Proposed)
- mindthegap-examples 2.3.0-3build2 in amd64 (Release)
- mindthegap-examples 2.3.0-2 in arm64 (Release)
- mindthegap-examples 2.3.0-3build2 in arm64 (Proposed)
- mindthegap-examples 2.3.0-3build2 in arm64 (Release)
- mindthegap-examples 2.3.0-2 in armhf (Release)
- mindthegap-examples 2.3.0-3build2 in armhf (Proposed)
- mindthegap-examples 2.3.0-3build2 in armhf (Release)
- mindthegap-examples 2.3.0-2 in i386 (Release)
- mindthegap-examples 2.3.0-3build2 in i386 (Proposed)
- mindthegap-examples 2.3.0-3build2 in i386 (Release)
- mindthegap-examples 2.3.0-2 in ppc64el (Release)
- mindthegap-examples 2.3.0-3build2 in ppc64el (Proposed)
- mindthegap-examples 2.3.0-3build2 in ppc64el (Release)
- mindthegap-examples 2.3.0-2 in riscv64 (Release)
- mindthegap-examples 2.3.0-3build2 in riscv64 (Proposed)
- mindthegap-examples 2.3.0-3build2 in riscv64 (Release)
- mindthegap-examples 2.3.0-2 in s390x (Release)
- mindthegap-examples 2.3.0-3build2 in s390x (Proposed)
- mindthegap-examples 2.3.0-3build2 in s390x (Release)