vcfanno 0.3.5+ds-1 (s390x binary) in ubuntu mantic
Vcfanno allows you to quickly annotate your VCF with any number of INFO
fields from any number of VCFs or BED files. It uses a simple conf file
to allow the user to specify the source annotation files and fields and
how they will be added to the info of the query VCF.
.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
.
Vcfanno is written in go and it supports custom user-scripts written in
Lua. It can annotate more than 8000 variants per second with 34
annotations from 9 files on a modest laptop and over 30K variants per
second using 12 processes on a server.
Details
- Package version:
- 0.3.5+ds-1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
- vcfanno_0.3.5+ds-1_s390x.deb (2.2 MiB)
Package relationships
- Depends on:
- Built-Using:
- golang-1.19 (= 1.19.4-1ubuntu1)
- golang-github-biogo-hts (= 1.4.4+dfsg1-1)
- golang-github-brentp-bix (= 0.0~git20190718.00aa7a7+ds-2)
- golang-github-brentp-goluaez (= 0.0~git20160116.dd35d08-2)
- golang-github-brentp-irelate (= 0.0.1+ds-1)
- golang-github-brentp-vcfgo (= 0.0~git20190824.654ed2e-2)
- golang-github-klauspost-compress (= 1.15.12+ds1-1)
- golang-github-klauspost-pgzip (= 1.2.5-1)
- golang-github-pkg-errors (= 0.9.1-2)
- golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-2)
- golang-github-yuin-gluare (= 0.0~git20170607.d7c94f1-2)
- golang-github-yuin-gopher-lua (= 0.0~git20170915.0.eb1c729-5)
- golang-toml (= 1.2.0-2)