ggd-utils 1.0.0+ds-1ubuntu0.23.10.1 (armhf binary) in ubuntu mantic
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
Details
- Package version:
- 1.0.0+ds-1ubuntu0.23.10.1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
armhf build of ggd-utils 1.0.0+ds-1ubuntu0.23.10.1 in ubuntu mantic RELEASE produced
these files:
Package relationships
- Depends on: