maffilter-examples binary package in Ubuntu Mantic arm64
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
.
This package provides example data for maffilter.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
---|---|---|---|---|---|---|---|---|---|
2023-08-13 20:48:26 UTC | Published | Ubuntu Mantic arm64 | release | universe | science | Optional | 1.3.1+dfsg-5 | ||
|
|||||||||
Deleted | Ubuntu Mantic arm64 | proposed | universe | science | Optional | 1.3.1+dfsg-5 | |||
|
|||||||||
2023-08-13 20:48:54 UTC | Superseded | Ubuntu Mantic arm64 | release | universe | science | Optional | 1.3.1+dfsg-4 | ||
|