ruby-crb-blast binary package in Ubuntu Mantic amd64

 CRB-BLAST is a novel method for finding orthologs between one set of sequences
 and another. This is particularly useful in genome and transcriptome
 annotation.
 .
 CRB-BLAST initially performs a standard reciprocal best BLAST. It does this by
 performing BLAST alignments of query->target and target->query. Reciprocal
 best BLAST hits are those where the best match for any given query sequence in
 the query->target alignment is also the best hit of the match in the reverse
 (target->query) alignment.
 .
 Reciprocal best BLAST is a very conservative way to assign orthologs. The main
 innovation in CRB-BLAST is to learn an appropriate e-value cutoff to apply to
 each pairwise alignment by taking into account the overall relatedness of the
 two datasets being compared. This is done by fitting a function to the
 distribution of alignment e-values over sequence lengths. The function
 provides the e-value cutoff for a sequence of given length.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2023-08-22 08:39:12 UTC Published Ubuntu Mantic amd64 release universe ruby Optional 0.6.9-5
  • Published
  • Copied from ubuntu mantic-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Mantic amd64 proposed universe ruby Optional 0.6.9-5
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to mantic

  • Published
  2023-08-22 08:39:19 UTC Superseded Ubuntu Mantic amd64 release universe ruby Optional 0.6.9-4
  • Removal requested .
  • Superseded by amd64 build of ruby-crb-blast 0.6.9-5 in ubuntu mantic PROPOSED
  • Published
  • Copied from ubuntu focal-proposed amd64 in Primary Archive for Ubuntu