r-bioc-dada2 binary package in Ubuntu Mantic amd64

 The dada2 package contributes to software workflows to interpret
 sequencing data from microbiota - the relative abundance of
 bacterial and/or yeast, typically measured in the gut.
 It infers exact amplicon sequence
 variants (ASVs) from high-throughput amplicon sequencing data,
 replacing the coarser and less accurate OTU clustering approach.
 The dada2 pipeline takes as input demultiplexed fastq files, and
 outputs the sequence variants and their sample-wise abundances
 after removing substitution and chimera errors. Taxonomic
 classification is available via a native implementation of the RDP
 naive Bayesian classifier, and species-level assignment to 16S
 rRNA gene fragments by exact matching.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2023-08-15 13:47:51 UTC Published Ubuntu Mantic amd64 release universe gnu-r Optional 1.28.0+dfsg-1
  • Published
  • Copied from ubuntu mantic-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Mantic amd64 proposed universe gnu-r Optional 1.28.0+dfsg-1
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to mantic

  • Published
  2023-08-15 13:48:46 UTC Superseded Ubuntu Mantic amd64 release universe gnu-r Optional 1.26.0+dfsg-1
  • Removal requested .
  • Superseded by amd64 build of r-bioc-dada2 1.28.0+dfsg-1 in ubuntu mantic PROPOSED
  • Published
  • Copied from ubuntu lunar-proposed amd64 in Primary Archive for Ubuntu