r-bioc-dada2 binary package in Ubuntu Mantic amd64
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2023-08-15 13:47:51 UTC | Published | Ubuntu Mantic amd64 | release | universe | gnu-r | Optional | 1.28.0+dfsg-1 | ||
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Deleted | Ubuntu Mantic amd64 | proposed | universe | gnu-r | Optional | 1.28.0+dfsg-1 | |||
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2023-08-15 13:48:46 UTC | Superseded | Ubuntu Mantic amd64 | release | universe | gnu-r | Optional | 1.26.0+dfsg-1 | ||
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