ggd-utils 1.0.0+ds-1build1 (amd64 binary) in ubuntu mantic
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
Details
- Package version:
- 1.0.0+ds-1build1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of ggd-utils 1.0.0+ds-1build1 in ubuntu mantic PROPOSED produced
these files:
- ggd-utils_1.0.0+ds-1build1_amd64.deb (1.9 MiB)
Package relationships
- Depends on:
- Built-Using:
- golang-1.21 (= 1.21.0-1)
- golang-github-alexflint-go-arg (= 1.3.0+ds-2)
- golang-github-alexflint-go-scalar (= 1.0.0+ds-2)
- golang-github-biogo-hts (= 1.4.4+dfsg1-1)
- golang-github-klauspost-compress (= 1.15.12+ds1-3)
- golang-github-klauspost-pgzip (= 1.2.5-2)
- golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-2)