Binary package “gsort” in ubuntu mantic
sort genomic data
gsort is a tool to sort genomic files according to a genomefile.
For example, to sort VCF to have order:
X, Y, 2, 1, 3, ... and the header needs to be kept at the top.
.
As a more likely example, if a file nneds to be sorted to match GATK
order (1 ... X, Y, MT) which is not possible with any other sorting
tool. With gsort one can simply place MT as the last chrom in the
".genome" file.
.
It will also be useful for getting files ready for use in bedtools.
Source package
Published versions
- gsort 0.1.4-3 in amd64 (Release)
- gsort 0.1.4-3build1 in amd64 (Proposed)
- gsort 0.1.4-3build1 in amd64 (Release)
- gsort 0.1.4-3ubuntu0.23.10.1 in amd64 (Security)
- gsort 0.1.4-3ubuntu0.23.10.1 in amd64 (Updates)
- gsort 0.1.4-3 in arm64 (Release)
- gsort 0.1.4-3build1 in arm64 (Proposed)
- gsort 0.1.4-3build1 in arm64 (Release)
- gsort 0.1.4-3ubuntu0.23.10.1 in arm64 (Security)
- gsort 0.1.4-3ubuntu0.23.10.1 in arm64 (Updates)
- gsort 0.1.4-3 in armhf (Release)
- gsort 0.1.4-3build1 in armhf (Proposed)
- gsort 0.1.4-3build1 in armhf (Release)
- gsort 0.1.4-3ubuntu0.23.10.1 in armhf (Security)
- gsort 0.1.4-3ubuntu0.23.10.1 in armhf (Updates)
- gsort 0.1.4-3 in ppc64el (Release)
- gsort 0.1.4-3build1 in ppc64el (Proposed)
- gsort 0.1.4-3build1 in ppc64el (Release)
- gsort 0.1.4-3ubuntu0.23.10.1 in ppc64el (Security)
- gsort 0.1.4-3ubuntu0.23.10.1 in ppc64el (Updates)
- gsort 0.1.4-3 in riscv64 (Release)
- gsort 0.1.4-3build1 in riscv64 (Proposed)
- gsort 0.1.4-3build1 in riscv64 (Release)
- gsort 0.1.4-3ubuntu0.23.10.1 in riscv64 (Security)
- gsort 0.1.4-3ubuntu0.23.10.1 in riscv64 (Updates)
- gsort 0.1.4-3 in s390x (Release)
- gsort 0.1.4-3build1 in s390x (Proposed)
- gsort 0.1.4-3build1 in s390x (Release)
- gsort 0.1.4-3ubuntu0.23.10.1 in s390x (Security)
- gsort 0.1.4-3ubuntu0.23.10.1 in s390x (Updates)