toppred binary package in Ubuntu Lunar riscv64

 Toppred is a program to determine the topology of a transmembrane
 protein based on G. von Heijne algorithm.
 .
 Each sequence from seq data in fasta format is processed, and toppred
 generate the Hydrophobycity profile of the sequence, and the
 corresponding hydrophobycities values in the file sequence-ID.hydro.
 .
 Furthermore, the predicted topologies are represented as png images.
 Each topology is stored in file sequence-ID-number.png
 .
 The hydrophobicity profile is computed using a window formed by a core
 rectangular window of size n, flanked by 2 triangular windows of size q.
 NB rectangular and triangular mean that the ponderation values inside
 those windows are respectively constant and variable.
 .
 This program is a new implementation of the original toppred program,
 based on G. von Heijne algorithm

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2022-11-29 11:43:37 UTC Published Ubuntu Lunar riscv64 release universe science Optional 1.10-10
  • Published
  • Copied from ubuntu lunar-proposed riscv64 in Primary Archive for Ubuntu
  Deleted Ubuntu Lunar riscv64 proposed universe science Optional 1.10-10
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to lunar

  • Published
  2022-11-29 11:44:42 UTC Superseded Ubuntu Lunar riscv64 release universe science Optional 1.10-9
  • Removal requested .
  • Superseded by riscv64 build of toppred 1.10-10 in ubuntu lunar PROPOSED
  • Published
  • Copied from ubuntu jammy-proposed riscv64 in Primary Archive for Ubuntu

Source package