minimap2 binary package in Ubuntu Lunar riscv64
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-
genome alignment between two closely related species with divergence
below ~15%.
.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2023-03-20 18:23:49 UTC | Published | Ubuntu Lunar riscv64 | release | universe | science | Optional | 2.24+dfsg-3build1 | ||
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Deleted | Ubuntu Lunar riscv64 | proposed | universe | science | Optional | 2.24+dfsg-3build1 | |||
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2023-03-20 18:24:05 UTC | Superseded | Ubuntu Lunar riscv64 | release | universe | science | Optional | 2.24+dfsg-3 | ||
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2023-03-21 18:10:10 UTC | Deleted | Ubuntu Lunar riscv64 | proposed | universe | science | Optional | 2.24+dfsg-3 | ||
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2022-12-02 21:16:08 UTC | Superseded | Ubuntu Lunar riscv64 | release | universe | science | Optional | 2.24+dfsg-2build1 | ||
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2022-12-04 00:10:10 UTC | Deleted | Ubuntu Lunar riscv64 | proposed | universe | science | Optional | 2.24+dfsg-2build1 | ||
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2022-11-03 22:29:18 UTC | Superseded | Ubuntu Lunar riscv64 | release | universe | science | Optional | 2.24+dfsg-2 | ||
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