reapr binary package in Ubuntu Lunar ppc64el

 REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
 paired end reads, without the use of a reference genome for comparison. It can
 be used in any stage of an assembly pipeline to automatically break incorrect
 scaffolds and flag other errors in an assembly for manual inspection. It
 reports mis-assemblies and other warnings, and produces a new broken assembly
 based on the error calls.
 .
 The software requires as input an assembly in FASTA format and paired reads
 mapped to the assembly in a BAM file. Mapping information such as the fragment
 coverage and insert size distribution is analysed to locate mis-assemblies.
 REAPR works best using mapped read pairs from a large insert library (at least
 1000bp). Additionally, if a short insert Illumina library is also available,
 REAPR can combine this with the large insert library in order to score each
 base of the assembly.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2022-11-24 02:23:41 UTC Published Ubuntu Lunar ppc64el release universe science Optional 1.0.18+dfsg-5build2
  • Published
  • Copied from ubuntu lunar-proposed ppc64el in Primary Archive for Ubuntu
  Deleted Ubuntu Lunar ppc64el proposed universe science Optional 1.0.18+dfsg-5build2
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to lunar

  • Published
  2022-11-24 02:24:40 UTC Superseded Ubuntu Lunar ppc64el release universe science Optional 1.0.18+dfsg-5build1
  • Removal requested .
  • Superseded by ppc64el build of reapr 1.0.18+dfsg-5build2 in ubuntu lunar PROPOSED
  • Published
  • Copied from ubuntu focal-proposed ppc64el in Primary Archive for Ubuntu

Source package