rna-star 2.7.10a+dfsg-4 (amd64 binary) in ubuntu lunar
Spliced Transcripts Alignment to a Reference (STAR) software based on a
previously undescribed RNA-seq alignment algorithm that uses sequential
maximum mappable seed search in uncompressed suffix arrays followed by
seed clustering and stitching procedure. STAR outperforms other aligners
by a factor of >50 in mapping speed, aligning to the human genome 550
million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
while at the same time improving alignment sensitivity and precision. In
addition to unbiased de novo detection of canonical junctions, STAR can
discover non-canonical splices and chimeric (fusion) transcripts, and is
also capable of mapping full-length RNA sequences. Using Roche 454
sequencing of reverse transcription polymerase chain reaction amplicons,
the authors experimentally validated 1960 novel intergenic splice
junctions with an 80-90% success rate, corroborating the high precision
of the STAR mapping strategy.
Details
- Package version:
- 2.7.10a+dfsg-4
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
- rna-star_2.7.10a+dfsg-4_amd64.deb (2.4 MiB)
Package relationships
- Built-Using: