iqtree binary package in Ubuntu Lunar amd64
IQ-TREE is a very efficient maximum likelihood phylogenetic software
with following key features among others:
.
* A novel fast and effective stochastic algorithm to estimate maximum
likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
of likelihood while requiring similar amount of computing time (see
Nguyen et al., 2015)
* An ultrafast bootstrap approximation to assess branch supports (see
Minh et al., 2013).
* A wide range of substitution models for binary, DNA, protein, codon,
and morphological alignments.
* Ultrafast model selection for all data types, 10 to 100 times faster
than jModelTest and ProtTest.
* Finding best partition scheme like PartitionFinder.
* Partitioned models with mixed data types for phylogenomic (multi-
gene) alignments, allowing for separate, proportional, or joint
branch lengths among genes.
* Supporting the phylogenetic likelihod library (PLL) (see Flouri et
al., 2014)
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
---|---|---|---|---|---|---|---|---|---|
2022-10-27 17:20:10 UTC | Published | Ubuntu Lunar amd64 | release | universe | science | Optional | 2.0.7+dfsg-1 | ||
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