r-cran-bios2cor 2.2-2 (i386 binary) in ubuntu kinetic
Analysis Utilities for computation and analysis of
correlation/
side chain motions during molecular dynamics simulations. Features
include the computation of correlation/
variety of scoring functions between either sequence positions in
alignments or side chain dihedral angles in molecular dynamics
simulations and utilities to analyze the correlation/
matrix through a variety of tools including network representation
and principal components analysis. In addition, several utility
functions are based on the R graphical environment to provide
friendly tools for help in data interpretation. Examples of
sequence covariation analysis are provided in: (1) Pele J, Moreau
M, Abdi H, Rodien P, Castel H, Chabbert M (2014)
<doi:10.
Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) <doi:
10.1371/
motion analysis is provided in: Taddese B, Garnier A, Abdi H,
Henrion D, Chabbert M (2020) <doi: 10.1038/
1>. This work was supported by the French National Research
Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant
number: 100567).
Details
- Package version:
- 2.2-2
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
- r-cran-bios2cor_2.2-2_all.deb (675.9 KiB)
Package relationships
- Depends on: