dialign-tx 1.0.2-1 (armel binary) in ubuntu jaunty

 DIALIGN-TX is a command line tool to perform multiple alignment of protein or
 DNA sequences. It is a complete reimplementation of the segment-base approach
 including several new improvements and heuristics that significantly enhance
 the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T.
 For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that
 favours chains of low-scoring local alignments over isolated high-scoring
 fragments. For multiple alignment, DIALIGN-TX uses an improved greedy
 procedure that is less sensitive to spurious local sequence similarities.
 .
 DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann,
 Burkhard Morgenstern: Improvement of the segment-based approach for multiple
 sequence alignment by combining greedy and progressive alignment strategies,
 Algorithms for Molecular Biology 3:6, 2008