gemma binary package in Ubuntu Jammy riscv64

 GEMMA is the software implementing the Genome-wide Efficient Mixed
 Model Association algorithm for a standard linear mixed model and some
 of its close relatives for genome-wide association studies (GWAS):
 .
  * It fits a univariate linear mixed model (LMM) for marker association
    tests with a single phenotype to account for population stratification
    and sample structure, and for estimating the proportion of variance in
    phenotypes explained (PVE) by typed genotypes (i.e. "chip heritability").
  * It fits a multivariate linear mixed model (mvLMM) for testing marker
    associations with multiple phenotypes simultaneously while controlling
    for population stratification, and for estimating genetic correlations
    among complex phenotypes.
  * It fits a Bayesian sparse linear mixed model (BSLMM) using Markov
    chain Monte Carlo (MCMC) for estimating PVE by typed genotypes,
    predicting phenotypes, and identifying associated markers by jointly
    modeling all markers while controlling for population structure.
  * It estimates variance component/chip heritability, and partitions
    it by different SNP functional categories. In particular, it uses HE
    regression or REML AI algorithm to estimate variance components when
    individual-level data are available. It uses MQS to estimate variance
    components when only summary statisics are available.
 .
 GEMMA is computationally efficient for large scale GWAS and uses freely
 available open-source numerical libraries.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2021-12-14 00:38:49 UTC Published Ubuntu Jammy riscv64 release universe science Optional 0.98.5+dfsg-1build1
  • Published
  • Copied from ubuntu jammy-proposed riscv64 in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy riscv64 proposed universe science Optional 0.98.5+dfsg-1build1
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-12-14 00:42:29 UTC Superseded Ubuntu Jammy riscv64 release universe science Optional 0.98.5+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by riscv64 build of gemma 0.98.5+dfsg-1build1 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu jammy-proposed riscv64 in Primary Archive for Ubuntu
  2021-12-15 06:10:09 UTC Deleted Ubuntu Jammy riscv64 proposed universe science Optional 0.98.5+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-11-04 14:35:47 UTC Superseded Ubuntu Jammy riscv64 release universe science Optional 0.98.4+dfsg-4
  • Removed from disk .
  • Removal requested .
  • Superseded by riscv64 build of gemma 0.98.5+dfsg-1 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu impish-proposed riscv64 in Primary Archive for Ubuntu

Source package