hisat2 binary package in Ubuntu Jammy ppc64el

 HISAT2 is a fast and sensitive alignment program for mapping next-generation
 sequencing reads (both DNA and RNA) to a population of human genomes (as well
 as against a single reference genome). Based on an extension of BWT for graphs
 a graph FM index (GFM) was designed and implementd. In addition to using
 one global GFM index that represents a population of human genomes, HISAT2
 uses a large set of small GFM indexes that collectively cover the whole genome
 (each index representing a genomic region of 56 Kbp, with 55,000 indexes
 needed to cover the human population). These small indexes (called local
 indexes), combined with several alignment strategies, enable rapid and
 accurate alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2021-11-04 14:34:08 UTC Published Ubuntu Jammy ppc64el release universe science Optional 2.2.1-3
  • Published
  • Copied from ubuntu jammy-proposed ppc64el in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy ppc64el proposed universe science Optional 2.2.1-3
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-11-04 14:35:47 UTC Superseded Ubuntu Jammy ppc64el release universe science Optional 2.2.1-2
  • Removed from disk .
  • Removal requested .
  • Superseded by ppc64el build of hisat2 2.2.1-3 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu hirsute-proposed ppc64el in Primary Archive for Ubuntu

Source package