toppred 1.10-9 (amd64 binary) in ubuntu jammy
Toppred is a program to determine the topology of a transmembrane
protein based on G. von Heijne algorithm.
.
Each sequence from seq data in fasta format is processed, and toppred
generate the Hydrophobycity profile of the sequence, and the
corresponding hydrophobycities values in the file sequence-ID.hydro.
.
Furthermore, the predicted topologies are represented as png images.
Each topology is stored in file sequence-
.
The hydrophobicity profile is computed using a window formed by a core
rectangular window of size n, flanked by 2 triangular windows of size q.
NB rectangular and triangular mean that the ponderation values inside
those windows are respectively constant and variable.
.
This program is a new implementation of the original toppred program,
based on G. von Heijne algorithm
Details
- Package version:
- 1.10-9
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
- toppred_1.10-9_amd64.deb (41.7 KiB)
Package relationships
- Depends on: