prodigal binary package in Ubuntu Jammy amd64

 Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a
 microbial (bacterial and archaeal) gene finding program developed at
 Oak Ridge National Laboratory and the University of Tennessee.
 Key features of Prodigal include:
 .
 Speed: Prodigal is an extremely fast gene recognition tool
 (written in very vanilla C). It can analyze an entire microbial genome
 in 30 seconds or less.
 .
 Accuracy: Prodigal is a highly accurate gene finder.
 It correctly locates the 3' end of every gene in the experimentally verified
 Ecogene data set (except those containing introns).
 It possesses a very sophisticated ribosomal binding site scoring system that
 enables it to locate the translation initiation site with great accuracy
 (96% of the 5' ends in the Ecogene data set are located correctly).
 .
 Specificity: Prodigal's false positive rate compares favorably with other
 gene identification programs, and usually falls under 5%.
 .
 GC-Content Indifferent: Prodigal performs well even in high GC genomes,
 with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated
 annotations.
 .
 Metagenomic Version: Prodigal can run in metagenomic mode and analyze
 sequences even when the organism is unknown.
 .
 Ease of Use: Prodigal can be run in one step on a single genomic sequence
 or on a draft genome containing many sequences. It does not need to be
 supplied with any knowledge of the organism, as it learns all the properties
 it needs to on its own.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2021-11-04 14:34:08 UTC Published Ubuntu Jammy amd64 release universe science Optional 1:2.6.3-5
  • Published
  • Copied from ubuntu jammy-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy amd64 proposed universe science Optional 1:2.6.3-5
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-11-04 14:35:47 UTC Superseded Ubuntu Jammy amd64 release universe science Optional 1:2.6.3-4
  • Removal requested .
  • Superseded by amd64 build of prodigal 1:2.6.3-5 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu cosmic-proposed amd64 in Primary Archive for Ubuntu