Binary package “sspace” in ubuntu jammy
scaffolding pre-assembled contigs after extension
SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE)
is a script able to extend and scaffold pre-assembled contigs using one or
more mate pairs or paired-end libraries, or even a combination.
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SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to
extend and scaffold pre-assembled contigs for multiple paired reads
libraries.
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This is the free 'basic' version of SSPACE. The non-free 'standard' version is
available directly from Baseclear.
Source package
Published versions
- sspace 2.1.1+dfsg-5 in amd64 (Release)
- sspace 2.1.1+dfsg-6 in amd64 (Proposed)
- sspace 2.1.1+dfsg-6 in amd64 (Release)
- sspace 2.1.1+dfsg-5 in arm64 (Release)
- sspace 2.1.1+dfsg-6 in arm64 (Proposed)
- sspace 2.1.1+dfsg-6 in arm64 (Release)
- sspace 2.1.1+dfsg-5 in armhf (Release)
- sspace 2.1.1+dfsg-6 in armhf (Proposed)
- sspace 2.1.1+dfsg-6 in armhf (Release)
- sspace 2.1.1+dfsg-5 in i386 (Release)
- sspace 2.1.1+dfsg-6 in i386 (Proposed)
- sspace 2.1.1+dfsg-6 in i386 (Release)
- sspace 2.1.1+dfsg-5 in ppc64el (Release)
- sspace 2.1.1+dfsg-6 in ppc64el (Proposed)
- sspace 2.1.1+dfsg-6 in ppc64el (Release)
- sspace 2.1.1+dfsg-5 in riscv64 (Release)
- sspace 2.1.1+dfsg-6 in riscv64 (Proposed)
- sspace 2.1.1+dfsg-6 in riscv64 (Release)
- sspace 2.1.1+dfsg-5 in s390x (Release)
- sspace 2.1.1+dfsg-6 in s390x (Proposed)
- sspace 2.1.1+dfsg-6 in s390x (Release)