Binary package “bio-vcf” in ubuntu jammy
domain specific language (DSL) for processing the VCF format
Bio-vcf provides a domain specific language (DSL) for processing the
VCF format. Record named fields can be queried with regular
expressions, e.g.
.
sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.
.
Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf
is not only very fast for genome-wide (WGS) data, it also comes with a
really nice filtering, evaluation and rewrite language and it can
output any type of textual data, including VCF header and contents in
RDF and JSON.
Source package
Published versions
- bio-vcf 0.9.5-3 in amd64 (Proposed)
- bio-vcf 0.9.5-3 in amd64 (Release)
- bio-vcf 0.9.5-3 in arm64 (Proposed)
- bio-vcf 0.9.5-3 in arm64 (Release)
- bio-vcf 0.9.5-3 in armhf (Proposed)
- bio-vcf 0.9.5-3 in armhf (Release)
- bio-vcf 0.9.5-3 in i386 (Proposed)
- bio-vcf 0.9.5-3 in i386 (Release)
- bio-vcf 0.9.5-3 in ppc64el (Proposed)
- bio-vcf 0.9.5-3 in ppc64el (Release)
- bio-vcf 0.9.5-3 in riscv64 (Proposed)
- bio-vcf 0.9.5-3 in riscv64 (Release)
- bio-vcf 0.9.5-3 in s390x (Proposed)
- bio-vcf 0.9.5-3 in s390x (Release)