Comment 3 for bug 575945

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Marc Deslauriers (mdeslaur) wrote : Re: chkrootkit falsely flags files owned by Firefox 3 and Sun Java 6 valid packages

This is a well-known issue, and is mentioned in /usr/share/doc/chkrootkit/README.FALSE-POSITIVES and in the upstream FAQ: http://www.chkrootkit.org/faq/#8

Simply put, chkrootkit should not contain a whitelist of acceptable dotfiles by default, as a rootkit could simply use the files listed in the whitelist as known good hiding places.

That being said, the newer Debian/Ubuntu packages contain a patch that adds a "-e" option that lets administrators add their own whitelist. I think this is a reasonable idea and it should be included in the hardy package so chkrootkit can be used by system admins without constantly getting false positives.