r-bioc-genomicfeatures 1.38.2+dfsg-1 (ppc64el binary) in ubuntu groovy
A set of tools and methods for making and manipulating transcript
centric annotations. With these tools the user can easily download the
genomic locations of the transcripts, exons and cds of a given organism,
from either the UCSC Genome Browser or a BioMart database (more sources
will be supported in the future). This information is then stored in a
local database that keeps track of the relationship between transcripts,
exons, cds and genes. Flexible methods are provided for extracting the
desired features in a convenient format.
Details
- Package version:
- 1.38.2+dfsg-1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of r-bioc-genomicfeatures 1.38.2+dfsg-1 in ubuntu focal PROPOSED produced
these files:
Package relationships
- Depends on:
- r-api-3.5
- r-api-bioc-3.10
- r-base-core (>= 3.6.2-2build1)
- r-bioc-annotationdbi (>= 1.41.4)
- r-bioc-biobase (>= 2.15.1)
- r-bioc-biocgenerics (>= 0.1.0)
- r-bioc-biomart (>= 2.17.1)
- r-bioc-biostrings (>= 2.47.6)
- r-bioc-genomeinfodb (>= 1.15.4)
- r-bioc-genomicranges (>= 1.31.17)
- r-bioc-iranges (>= 2.13.23)
- r-bioc-rtracklayer (>= 1.39.7)
- r-bioc-s4vectors (>= 0.17.29)
- r-bioc-xvector (>= 0.19.7)
- r-cran-dbi
- r-cran-rcurl
- r-cran-rsqlite (>= 2.0)
