fastahack 1.0.0+dfsg-5build1 (riscv64 binary) in ubuntu focal
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
Details
- Package version:
- 1.0.0+dfsg-5build1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
- fastahack_1.0.0+dfsg-5build1_riscv64.deb (10.1 KiB)
Package relationships
- Replaces:
- Breaks: