fastahack binary package in Ubuntu Focal ppc64el
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-02-08 21:18:14 UTC | Published | Ubuntu Focal ppc64el | release | universe | science | Optional | 1.0.0+dfsg-5build1 | ||
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Deleted | Ubuntu Focal ppc64el | proposed | universe | science | Optional | 1.0.0+dfsg-5build1 | |||
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2020-02-08 21:18:20 UTC | Superseded | Ubuntu Focal ppc64el | release | universe | science | Optional | 1.0.0+dfsg-5 | ||
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2020-02-10 00:10:10 UTC | Deleted | Ubuntu Focal ppc64el | proposed | universe | science | Optional | 1.0.0+dfsg-5 | ||
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2020-01-11 02:38:21 UTC | Superseded | Ubuntu Focal ppc64el | release | universe | science | Optional | 1.0.0+dfsg-4 | ||
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2020-01-12 06:10:08 UTC | Deleted | Ubuntu Focal ppc64el | proposed | universe | science | Optional | 1.0.0+dfsg-4 | ||
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2020-01-10 00:48:24 UTC | Superseded | Ubuntu Focal ppc64el | release | universe | science | Optional | 1.0.0+dfsg-2ubuntu1 | ||
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2020-01-11 06:10:09 UTC | Deleted | Ubuntu Focal ppc64el | proposed | universe | science | Optional | 1.0.0+dfsg-2ubuntu1 | ||
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2020-01-08 09:48:18 UTC | Superseded | Ubuntu Focal ppc64el | release | universe | science | Optional | 0.0+git20160702.bbc645f+dfsg-6 | ||
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