r-bioc-dada2 binary package in Ubuntu Focal amd64
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-02-27 11:13:28 UTC | Published | Ubuntu Focal amd64 | release | universe | gnu-r | Optional | 1.14.1+dfsg-1 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | gnu-r | Optional | 1.14.1+dfsg-1 | |||
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2020-02-27 11:15:54 UTC | Superseded | Ubuntu Focal amd64 | release | universe | gnu-r | Optional | 1.14.0+dfsg-1 | ||
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2020-02-28 12:10:13 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | gnu-r | Optional | 1.14.0+dfsg-1 | ||
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