med-bio 3.0.1ubuntu1 (s390x binary) in ubuntu cosmic
This metapackage will install Debian packages for use in molecular biology,
structural biology and other biological sciences.
Details
- Package version:
- 3.0.1ubuntu1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of debian-med 3.0.1ubuntu1 in ubuntu artful PROPOSED produced
these files:
- med-bio_3.0.1ubuntu1_all.deb (7.2 KiB)
Package relationships
- Suggests:
- abyss
- acacia
- adun.app
- amos-assembler
- amoscmp
- apollo
- arachne
- arb
- asap
- autodocktools
- axparafit
- axpcoords
- bagpipe
- bambus
- beads
- beast-mcmc
- biceps
- big-blast
- bigsdb
- biomaj
- biomaj-watcher
- bitseq
- blat
- blimps-utils
- blixem
- blobology
- btk-core
- cactus
- caftools
- cain
- canu
- cap3
- ccs
- cdna-db
- cinema
- clonalorigin
- clustalx
- cluster3
- cmap
- cnvkit
- coalesce
- compclust
- condetri
- contrafold
- contralign
- coot
- copycat
- crossbow
- crux-toolkit
- cufflinks
- cytoscape
- das-proserver
- dazzle
- decipher
- e-hive
- ecell
- eigensoft
- elph
- embassy-phylip
- emboss-explorer
- emmax
- emperor
- ensembl
- est-db
- estferret
- estscan
- euler-sr
- euler2
- exabayes
- exalt
- excavator
- fasta
- fasta3
- ffp
- figaro
- finex
- fluctuate
- forester
- forge
- galaxy
- gassst
- gatk
- gbioseq
- gbrowse-syn
- genemark
- genesplicer
- genetrack
- genezilla
- genographer
- gentle
- getdata
- glimmerhmm
- gmap
- gmv
- grabix
- grogui
- haploview
- hawkeye
- hexamer
- hilbertvisgui
- htqc
- igv
- inspect
- jbrowse
- jigsaw
- jstreeview
- kclust
- kempbasu
- lagan
- lamarc
- lofreq
- logomat-m
- lucy
- mach-haplotyper
- mage2tab
- maker2
- malt
- manta
- martj
- maude
- maxd
- melting-gui
- meme
- mesquite
- metabit
- metarep
- metastudent-data
- metastudent-data-2
- metastudent-data-3
- mgltools-cadd
- mgltools-pmv
- mgltools-vision
- migrate
- minimus
- mirbase
- mobyle
- mobyle-programs
- mobyle-tutorials
- modeller
- molekel
- mosaik-aligner
- mpsqed
- mrs
- msatfinder
- mugsy
- mummergpu
- mview
- nanocall
- nextsv
- ngila
- ngsqctoolkit
- nw-align
- oases
- obitools
- obo-edit
- oligoarrayaux
- omegamap
- operondb
- pal2nal
- paml
- partigene
- partitionfinder
- patman
- patristic
- pcma
- pfaat
- phagefinder
- phast
- phpphylotree
- phylographer
- phylophlan
- phyloviz-core
- phylowin
- pipasic
- plato
- profit
- prokka
- prot4est
- pscan-tfbs
- psipred
- psortb
- pssh2
- pyrophosphate-tools
- python-orange
- python-reaper
- qtlcart
- qualimap
- r-bioc-annotationhub
- r-bioc-aroma.light
- r-bioc-ensembldb
- r-bioc-go.db
- r-bioc-savr
- r-cran-boolnet
- r-cran-metamix
- r-cran-pheatmap
- r-cran-qqman
- r-cran-rentrez
- r-other-apmswapp
- r-other-valdar-bagphenotype.library
- raccoon
- raster3d
- raxml-ng
- rbs-finder
- recombine
- repeatmasker
- rmblast
- roadtrips
- roche454ace2caf
- rose
- rosetta
- rsat
- sambamba
- sap
- science-workflow
- seaview
- segemehl
- sequenceconverter.app
- sift
- situs
- snpeff
- sparta
- spice
- splitstree
- spread-phy
- ssaha
- strap
- strap-base
- tacg
- taverna
- taxinspector
- tetra
- tide
- tigr-glimmer-mg
- trace2dbest
- tracetuner
- treebuilder3d
- treetime
- treeview
- tripal
- trnascan-se
- tvc
- twain
- unc-fish
- uniprime
- varmatch
- varscan
- vienna-rna
- vmd
- x-tandem-pipeline
- zodiac-zeden
- Recommends:
- abacas
- acedb-other
- acedb-other-belvu
- acedb-other-dotter
- adapterremoval
- adun-core
- aegean
- aevol
- alien-hunter
- alter-sequence-alignment
- altree
- amap-align
- ampliconnoise
- andi
- anfo
- aragorn
- arden
- ariba
- art-nextgen-simulation-tools
- artemis
- artfastqgenerator
- atac
- augustus
- autodock
- autodock-vina
- autogrid
- axe-demultiplexer
- baitfisher
- ballview
- bamtools
- barrnap
- bcftools
- beagle
- beast2-mcmc
- bedops
- bedtools
- berkeley-express
- bio-eagle
- bio-rainbow
- bio-tradis
- blasr
- bowtie
- bowtie2
- boxshade
- brig
- bwa
- cassiopee
- cd-hit
- cdbfasta
- cgview
- chimeraslayer
- circlator
- circos
- clearcut
- clonalframe
- clustalo
- clustalw
- codonw
- concavity
- conservation-code
- crac
- cutadapt
- daligner
- dascrubber
- datamash
- dawg
- dazzdb
- deepnano
- dialign
- dialign-tx
- diamond-aligner
- dindel
- discosnp
- disulfinder
- dnaclust
- dssp
- dwgsim
- ea-utils
- ecopcr
- edtsurf
- embassy-domainatrix
- embassy-domalign
- embassy-domsearch
- emboss
- examl
- exonerate
- falcon
- fastahack
- fastaq
- fastdnaml
- fastlink
- fastml
- fastqc
- fastqtl
- fasttree
- fastx-toolkit
- ffindex
- figtree
- filo
- fitgcp
- flexbar
- fml-asm
- freebayes
- freecontact
- fsa
- fsm-lite
- gamgi
- garli
- garlic
- gasic
- gbrowse
- gdpc
- genometools
- gff2aplot
- gff2ps
- ghemical
- giira
- glam2
- graphlan
- grinder
- gromacs
- gubbins
- gwama
- harvest-tools
- hhsuite
- hilive
- hisat2
- hmmer
- hmmer2
- hyphy-mpi
- hyphygui
- idba
- indelible
- infernal
- ipig
- iqtree
- iva
- jaligner
- jalview
- jellyfish
- jmodeltest
- jmol
- kalign
- khmer
- kineticstools
- king-probe
- kissplice
- kmc
- kmer
- kraken
- lambda-align
- last-align
- leaff
- lefse
- librg-utils-perl
- libvcflib-tools
- logol-bin
- loki
- ltrsift
- macs
- macsyfinder
- maffilter
- mafft
- mapdamage
- mapsembler2
- maq
- maqview
- mash
- massxpert
- mauve-aligner
- melting
- meryl
- metaphlan2
- metastudent
- mhap
- microbegps
- microbiomeutil
- minia
- miniasm
- minimap
- mipe
- mira-assembler
- mlv-smile
- mothur
- mptp
- mrbayes
- mummer
- murasaki
- muscle
- mustang
- nanopolish
- nast-ier
- ncbi-blast+
- ncbi-blast+-legacy
- ncbi-entrez-direct
- ncbi-epcr
- ncbi-seg
- ncbi-tools-bin
- ncbi-tools-x11
- ncl-tools
- ncoils
- neobio
- njplot
- norsnet
- norsp
- openms
- paleomix
- paraclu
- parsinsert
- parsnp
- pbalign
- pbbarcode
- pbdagcon
- pbgenomicconsensus
- pbh5tools
- pbhoney
- pbjelly
- pbsim
- pbsuite
- pdb2pqr
- perlprimer
- perm
- pftools
- phipack
- phybin
- phylip
- phyml
- physamp
- phyutility
- picard-tools
- piler
- pirs
- placnet
- plasmidomics
- plast
- plink
- plink1.9
- plip
- poa
- populations
- poretools
- prank
- predictnls
- predictprotein
- prime-phylo
- primer3
- proalign
- probabel
- probalign
- probcons
- proda
- prodigal
- profbval
- profisis
- profnet-bval
- profnet-chop
- profnet-con
- profnet-isis
- profnet-md
- profnet-norsnet
- profnet-prof
- profnet-snapfun
- profphd
- profphd-net
- profphd-utils
- proftmb
- progressivemauve
- proteinortho
- prottest
- pycorrfit
- pymol
- pynast
- pyscanfcs
- python-cogent
- python3-biomaj3
- qcumber
- qiime
- qtltools
- r-bioc-annotate
- r-bioc-biostrings
- r-bioc-cummerbund
- r-bioc-deseq2
- r-bioc-dnacopy
- r-bioc-ebseq
- r-bioc-edger
- r-bioc-genefilter
- r-bioc-geneplotter
- r-bioc-gviz
- r-bioc-hilbertvis
- r-bioc-limma
- r-bioc-mergeomics
- r-bioc-metagenomeseq
- r-bioc-phyloseq
- r-bioc-rtracklayer
- r-cran-adegenet
- r-cran-adephylo
- r-cran-ape
- r-cran-bio3d
- r-cran-distory
- r-cran-genabel
- r-cran-phangorn
- r-cran-pscbs
- r-cran-qtl
- r-cran-rotl
- r-cran-seqinr
- r-cran-treescape
- r-cran-vegan
- r-other-mott-happy.hbrem
- radiant
- rambo-k
- rapmap
- rasmol
- rate4site
- raxml
- ray
- rdp-alignment
- rdp-classifier
- rdp-readseq
- readseq
- reapr
- relion-bin
- relion-bin+gui
- repeatmasker-recon
- reprof
- rna-star
- rnahybrid
- roary
- roguenarok
- rsem
- rtax
- runcircos-gui
- saint
- salmon
- samtools
- scrm
- scythe
- seer
- seq-gen
- seqan-apps
- seqprep
- seqsero
- seqtk
- sga
- sibsim4
- sickle
- sigma-align
- sim4
- sim4db
- smalt
- smithwaterman
- smrtanalysis
- snap
- snap-aligner
- sniffles
- snp-sites
- snpomatic
- soapdenovo
- soapdenovo2
- sortmerna
- spaced
- spades
- sprai
- squizz
- sra-toolkit
- srst2
- ssake
- sspace
- ssw-align
- stacks
- staden
- staden-io-lib-utils
- subread
- suitename
- sumaclust
- sumatra
- sumtrees
- surankco
- swarm
- t-coffee
- tabix
- tantan
- theseus
- tigr-glimmer
- tm-align
- tnseq-transit
- tophat
- topp
- toppred
- transdecoder
- transrate-tools
- transtermhp
- tree-puzzle
- treeviewx
- trimmomatic
- trinityrnaseq
- uc-echo
- ugene
- varna
- vcftools
- velvet
- velvetoptimiser
- vsearch
- wigeon
- wise
- zalign
