jellyfish-examples binary package in Ubuntu Bionic ppc64el
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
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JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
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This package contains examples to test the package
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2018-04-10 21:44:16 UTC | Published | Ubuntu Bionic ppc64el | release | universe | science | Optional | 2.2.8-3build1 | ||
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Deleted | Ubuntu Bionic ppc64el | proposed | universe | science | Optional | 2.2.8-3build1 | |||
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2018-04-10 00:10:08 UTC | Deleted | Ubuntu Bionic ppc64el | release | universe | science | Optional | 2.2.6-6 | ||
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2018-04-10 00:10:08 UTC | Deleted | Ubuntu Bionic ppc64el | proposed | universe | science | Optional | 2.2.6-6 | ||
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