Ubuntu

libseqlib0 binary package in Ubuntu Bionic amd64

  1. Bionic (18.04)
  2. amd64
  3. libseqlib0

 C++ API and command line tool that provides a rapid and user-friendly
 interface to BAM/SAM/CRAM files, global sequence alignment operations
 and sequence assembly. Four C libraries perform core operations in
 SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
 and Fermi for error correction and sequence assembly. Benchmarking
 indicates that SeqLib has lower CPU and memory requirements than leading
 C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
 and assemble reads from a CRAM file and then align with BWA-MEM.
 SeqLib also provides additional capabilities, including chromosome-aware
 interval queries and read plotting. Command line tools are available for
 performing integrated error correction, micro-assemblies and alignment.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2018-03-17 22:58:38 UTC Published Ubuntu Bionic amd64 release universe libs Optional 1.1.1+dfsg-5
  • Published
  • Copied from ubuntu bionic-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Bionic amd64 proposed universe libs Optional 1.1.1+dfsg-5
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2018-03-17 23:00:20 UTC Superseded Ubuntu Bionic amd64 release universe libs Optional 1.1.1+dfsg-4ubuntu1
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of libseqlib 1.1.1+dfsg-5 in ubuntu bionic PROPOSED
  • Published
  • Copied from ubuntu bionic-proposed amd64 in Primary Archive for Ubuntu
  2018-03-19 00:10:09 UTC Deleted Ubuntu Bionic amd64 proposed universe libs Optional 1.1.1+dfsg-4ubuntu1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2018-03-17 11:02:01 UTC Superseded Ubuntu Bionic amd64 release universe libs Optional 1.1.1+dfsg-4
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of libseqlib 1.1.1+dfsg-4ubuntu1 in ubuntu bionic PROPOSED
  • Published
  • Copied from ubuntu bionic-proposed amd64 in Primary Archive for Ubuntu
  2018-03-18 12:10:09 UTC Deleted Ubuntu Bionic amd64 proposed universe libs Optional 1.1.1+dfsg-4
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2018-03-15 06:14:24 UTC Superseded Ubuntu Bionic amd64 release universe libs Optional 1.1.1+dfsg-3
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of libseqlib 1.1.1+dfsg-4 in ubuntu bionic PROPOSED
  • Published
  • Copied from ubuntu bionic-proposed amd64 in Primary Archive for Ubuntu
  2018-03-16 12:10:10 UTC Deleted Ubuntu Bionic amd64 proposed universe libs Optional 1.1.1+dfsg-3
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2017-12-21 07:49:24 UTC Superseded Ubuntu Bionic amd64 release universe libs Optional 1.1.1+dfsg-2
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of libseqlib 1.1.1+dfsg-3 in ubuntu bionic PROPOSED
  • Published
  • Copied from ubuntu artful-proposed amd64 in Primary Archive for Ubuntu

Source package