Binary package “prime-phylo” in ubuntu bionic
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package
supporting inference of evolutionary parameters in a Bayesian framework
using Markov chain Monte Carlo simulation. A distinguishing feature of
PrIME is that the species tree is taken into account when analyzing gene
trees.
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The input data to PrIME is a multiple sequence alignment in FASTA format
and the output data contains trees in Newick format.