Binary package “libjellyfish-2.0-dev” in ubuntu bionic
count k-mers in DNA sequences (development files of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
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JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
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This package contains the development files (static library and
header files)
Source package
Published versions
- libjellyfish-2.0-dev 2.2.8-3build1 in amd64 (Proposed)
- libjellyfish-2.0-dev 2.2.8-3build1 in amd64 (Release)
- libjellyfish-2.0-dev 2.2.8-3build1 in arm64 (Proposed)
- libjellyfish-2.0-dev 2.2.8-3build1 in arm64 (Release)
- libjellyfish-2.0-dev 2.2.8-3build1 in ppc64el (Proposed)
- libjellyfish-2.0-dev 2.2.8-3build1 in ppc64el (Release)