Binary package “fasttree” in ubuntu bionic
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-
alignments of nucleotide or protein sequences. It handles alignments
with up to a million of sequences in a reasonable amount of time and
memory. For large alignments, FastTree is 100-1,000 times faster than
PhyML 3.0 or RAxML 7.
.
FastTree is more accurate than PhyML 3 with default settings, and much
more accurate than the distance-matrix methods that are traditionally
used for large alignments. FastTree uses the Jukes-Cantor or generalized
time-reversible (GTR) models of nucleotide evolution and the JTT
(Jones-
for the varying rates of evolution across sites, FastTree uses a single
rate for each site (the "CAT" approximation). To quickly estimate the
reliability of each split in the tree, FastTree computes local support
values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
"SH-like local supports").
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This package contains a single threaded version (fasttree) and a
parallel version which uses OpenMP (fasttreMP).
Source package
Published versions
- fasttree 2.1.10-1 in amd64 (Proposed)
- fasttree 2.1.10-1 in amd64 (Release)
- fasttree 2.1.10-1 in arm64 (Proposed)
- fasttree 2.1.10-1 in arm64 (Release)
- fasttree 2.1.10-1 in armhf (Proposed)
- fasttree 2.1.10-1 in armhf (Release)
- fasttree 2.1.10-1 in i386 (Proposed)
- fasttree 2.1.10-1 in i386 (Release)
- fasttree 2.1.10-1 in ppc64el (Proposed)
- fasttree 2.1.10-1 in ppc64el (Release)
- fasttree 2.1.10-1 in s390x (Proposed)
- fasttree 2.1.10-1 in s390x (Release)