libjellyfish-perl 2.2.6-1build3 (amd64 binary) in ubuntu artful
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
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This package contains the Perl bindings of jellyfish.
Details
- Package version:
- 2.2.6-1build3
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
- libjellyfish-perl_2.2.6-1build3_amd64.deb (50.6 KiB)
Package relationships
- Depends on:
- libc6 (>= 2.14)
- libgcc1 (>= 1:3.0)
- libjellyfish-2.0-2
- perl (>= 5.26.0-5)
- perlapi-5.26.0