https://launchpad.net/ubuntu/+source/zalign/0.9.1-5/+build/20211381 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-042 4.15.0-121-generic #123-Ubuntu SMP Mon Oct 5 16:19:23 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 29 Oct 09:09:44 ntpdate[1649]: adjust time server 10.211.37.1 offset -0.000049 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20211381 --image-type chroot /home/buildd/filecache-default/6663ab897c1b9684e4da3138ea2f806b3d40e7b1 Creating target for build PACKAGEBUILD-20211381 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20211381 Starting target for build PACKAGEBUILD-20211381 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20211381 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20211381 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20211381 Updating target for build PACKAGEBUILD-20211381 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [114 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main armhf Packages [1338 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe armhf Packages [12.1 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5264 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf Packages [184 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [74.0 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf Packages [911 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [601 kB] Fetched 21.6 MB in 7s (2881 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd binutils binutils-arm-linux-gnueabihf binutils-common cpp-10 fakeroot g++-10 gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libfakeroot libgcc-10-dev libgcc-s1 libgomp1 libmpc3 libncurses6 libncursesw6 libnpth0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 ncurses-base ncurses-bin sysvinit-utils tzdata 48 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 194 MB of archives. After this operation, 596 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libcrypt-dev armhf 1:4.4.17-1ubuntu1 [113 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libcrypt1 armhf 1:4.4.17-1ubuntu1 [86.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main armhf base-files armhf 11ubuntu16 [60.2 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libncursesw6 armhf 6.2+20200918-1 [106 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libncurses6 armhf 6.2+20200918-1 [79.9 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtinfo6 armhf 6.2+20200918-1 [74.2 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf ncurses-bin armhf 6.2+20200918-1 [165 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libdebconfclient0 armhf 0.254ubuntu1 [5648 B] Get:9 http://ftpmaster.internal/ubuntu hirsute/main armhf base-passwd armhf 3.5.48 [46.0 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf ncurses-base all 6.2+20200918-1 [18.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main armhf sysvinit-utils armhf 2.96-5ubuntu1 [19.2 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main armhf libcc1-0 armhf 10.2.0-15ubuntu1 [34.6 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10-base armhf 10.2.0-15ubuntu1 [19.5 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-s1 armhf 10.2.0-15ubuntu1 [36.2 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main armhf libgomp1 armhf 10.2.0-15ubuntu1 [87.1 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main armhf libatomic1 armhf 10.2.0-15ubuntu1 [7216 B] Get:17 http://ftpmaster.internal/ubuntu hirsute/main armhf libasan6 armhf 10.2.0-15ubuntu1 [328 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main armhf libubsan1 armhf 10.2.0-15ubuntu1 [122 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main armhf g++-10 armhf 10.2.0-15ubuntu1 [63.0 MB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++-10-dev armhf 10.2.0-15ubuntu1 [1778 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main armhf libgcc-10-dev armhf 10.2.0-15ubuntu1 [719 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main armhf gcc-10 armhf 10.2.0-15ubuntu1 [63.7 MB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main armhf cpp-10 armhf 10.2.0-15ubuntu1 [57.0 MB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main armhf libstdc++6 armhf 10.2.0-15ubuntu1 [441 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libmpc3 armhf 1.2.0-1 [36.1 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf-nobfd0 armhf 2.35.1-2ubuntu1 [38.7 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libctf0 armhf 2.35.1-2ubuntu1 [37.6 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libbinutils armhf 2.35.1-2ubuntu1 [322 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-common armhf 2.35.1-2ubuntu1 [212 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils armhf 2.35.1-2ubuntu1 [3368 B] Get:31 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.35.1-2ubuntu1 [2060 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libapt-pkg6.0 armhf 2.1.11 [773 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libseccomp2 armhf 2.4.3-1ubuntu5 [32.6 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf apt armhf 2.1.11 [1254 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:36 http://ftpmaster.internal/ubuntu hirsute/main armhf libaudit1 armhf 1:2.8.5-3ubuntu2 [36.2 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main armhf libselinux1 armhf 3.1-2build1 [60.9 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage-common all 3.1-1build1 [10.1 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main armhf libsemanage1 armhf 3.1-1build1 [75.7 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc-common all 1.2.6-3 [7444 B] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc-dev armhf 1.2.6-3 [175 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libtirpc3 armhf 1.2.6-3 [66.1 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libapparmor1 armhf 3.0.0-0ubuntu2 [31.1 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libcap2 armhf 1:2.44-1 [14.7 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main armhf tzdata all 2020d-1ubuntu1 [293 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libfakeroot armhf 1.25.3-1 [23.2 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf fakeroot armhf 1.25.3-1 [60.9 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main armhf libnpth0 armhf 1.6-3 [6980 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 194 MB in 14s (13.5 MB/s) (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:armhf (1:4.4.17-1ubuntu1) ... (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu16_armhf.deb ... Unpacking base-files (11ubuntu16) over (11ubuntu14) ... Setting up base-files (11ubuntu16) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2+20200918-1_armhf.deb ... Unpacking libncursesw6:armhf (6.2+20200918-1) over (6.2-1) ... 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Setting up base-passwd (3.5.48) ... Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20200918-1_all.deb ... Unpacking ncurses-base (6.2+20200918-1) over (6.2-1) ... Setting up ncurses-base (6.2+20200918-1) ... (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-5ubuntu1_armhf.deb ... Unpacking sysvinit-utils (2.96-5ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-5ubuntu1) ... (Reading database ... 12723 files and directories currently installed.) Preparing to unpack .../libcc1-0_10.2.0-15ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (10.2.0-15ubuntu1) over (10.2.0-13ubuntu1) ... 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Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 29 09:11:06 UTC 2020. Universal Time is now: Thu Oct 29 09:11:06 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1) ... Setting up libtirpc-dev:armhf (1.2.6-3) ... Setting up libncurses6:armhf (6.2+20200918-1) ... Setting up libmpc3:armhf (1.2.0-1) ... Setting up libatomic1:armhf (10.2.0-15ubuntu1) ... Setting up libncursesw6:armhf (6.2+20200918-1) ... Setting up libubsan1:armhf (10.2.0-15ubuntu1) ... Setting up libcrypt-dev:armhf (1:4.4.17-1ubuntu1) ... Setting up libbinutils:armhf (2.35.1-2ubuntu1) ... Setting up libcc1-0:armhf (10.2.0-15ubuntu1) ... Setting up cpp-10 (10.2.0-15ubuntu1) ... Setting up libctf0:armhf (2.35.1-2ubuntu1) ... Setting up libgcc-10-dev:armhf (10.2.0-15ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.35.1-2ubuntu1) ... Setting up libstdc++-10-dev:armhf (10.2.0-15ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up gcc-10 (10.2.0-15ubuntu1) ... Setting up g++-10 (10.2.0-15ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20211381 armhf hirsute-proposed -c chroot:build-PACKAGEBUILD-20211381 --arch=armhf --dist=hirsute-proposed --nolog zalign_0.9.1-5.dsc Initiating build PACKAGEBUILD-20211381 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-121-generic #123-Ubuntu SMP Mon Oct 5 16:19:23 UTC 2020 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-042.buildd +==============================================================================+ | zalign 0.9.1-5 (armhf) Thu, 29 Oct 2020 09:11:08 +0000 | +==============================================================================+ Package: zalign Version: 0.9.1-5 Source Version: 0.9.1-5 Distribution: hirsute-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20211381/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- zalign_0.9.1-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/zalign-gFrC2H/zalign-0.9.1' with '<>' I: NOTICE: Log filtering will replace 'build/zalign-gFrC2H' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Px5vpK/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Px5vpK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Px5vpK/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Px5vpK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Px5vpK/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-Px5vpK/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (48.1 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Px5vpK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (58.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12722 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libopenmpi-dev Filtered Build-Depends: debhelper-compat (= 13), libopenmpi-dev dpkg-deb: building package 'sbuild-build-depends-zalign-dummy' in '/<>/resolver-Px5vpK/apt_archive/sbuild-build-depends-zalign-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-zalign-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Px5vpK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Px5vpK/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Px5vpK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Px5vpK/apt_archive ./ Sources [502 B] Get:5 copy:/<>/resolver-Px5vpK/apt_archive ./ Packages [578 B] Fetched 2043 B in 0s (55.9 kB/s) Reading package lists... Reading package lists... Install zalign build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cpp-9 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-9 gcc-9-base gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libasan5 libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfido2-1 libfile-stripnondeterminism-perl libgcc-9-dev libgfortran-9-dev libgfortran5 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu67 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc gcc-9-locales dh-make gcc-9-multilib gcc-9-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libcoarrays-openmpi-dev xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cpp-9 debhelper dh-autoreconf dh-strip-nondeterminism dwz file gcc-9 gcc-9-base gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libasan5 libbsd0 libcbor0.6 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfido2-1 libfile-stripnondeterminism-perl libgcc-9-dev libgfortran-9-dev libgfortran5 libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu67 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libsigsegv2 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-zalign-dummy zlib1g-dev 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu hirsute/main armhf ocl-icd-libopencl1 armhf 2.2.12-4 [28.9 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf libhwloc-plugins armhf 2.3.0+dfsg-2 [12.8 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf libpmix2 armhf 3.2.0-1 [393 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/universe armhf libopenmpi3 armhf 4.0.3-6ubuntu2 [1728 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/universe armhf openmpi-common all 4.0.3-6ubuntu2 [151 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/universe armhf openmpi-bin armhf 4.0.3-6ubuntu2 [65.9 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu4 [149 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main armhf libnuma-dev armhf 2.0.12-1build1 [30.4 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute-proposed/universe armhf libhwloc-dev armhf 2.3.0+dfsg-2 [194 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main armhf libibverbs-dev armhf 31.0-1 [176 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/universe armhf libopenmpi-dev armhf 4.0.3-6ubuntu2 [804 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.4 MB in 2s (21.1 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12722 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_armhf.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_armhf.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.38-5_armhf.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Selecting previously unselected package libibverbs1:armhf. Preparing to unpack .../54-libibverbs1_31.0-1_armhf.deb ... Unpacking libibverbs1:armhf (31.0-1) ... Selecting previously unselected package ibverbs-providers:armhf. Preparing to unpack .../55-ibverbs-providers_31.0-1_armhf.deb ... Unpacking ibverbs-providers:armhf (31.0-1) ... Selecting previously unselected package libevent-2.1-7:armhf. Preparing to unpack .../56-libevent-2.1-7_2.1.12-stable-1_armhf.deb ... Unpacking libevent-2.1-7:armhf (2.1.12-stable-1) ... Selecting previously unselected package libevent-core-2.1-7:armhf. Preparing to unpack .../57-libevent-core-2.1-7_2.1.12-stable-1_armhf.deb ... Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-1) ... Selecting previously unselected package libevent-extra-2.1-7:armhf. Preparing to unpack .../58-libevent-extra-2.1-7_2.1.12-stable-1_armhf.deb ... Unpacking libevent-extra-2.1-7:armhf (2.1.12-stable-1) ... 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Setting up libpipeline1:armhf (1.5.3-1) ... Setting up libpciaccess0:armhf (0.16-1) ... Setting up libxau6:armhf (1:1.0.9-0ubuntu1) ... Setting up bsdextrautils (2.36-3ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.66.1-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libmagic1:armhf (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up libcbor0.6:armhf (0.6.0-0ubuntu3) ... Setting up autotools-dev (20180224.1) ... Setting up libx11-data (2:1.6.12-1) ... Setting up libsigsegv2:armhf (2.12-2build1) ... Setting up libhwloc15:armhf (2.3.0+dfsg-2) ... Setting up libevent-core-2.1-7:armhf (2.1.12-stable-1) ... Setting up libevent-2.1-7:armhf (2.1.12-stable-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libltdl7:armhf (2.4.6-14) ... Setting up libgfortran5:armhf (10.2.0-15ubuntu1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu4) ... Setting up libnuma1:armhf (2.0.12-1build1) ... Setting up ocl-icd-libopencl1:armhf (2.2.12-4) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libnl-3-200:armhf (3.4.0-1) ... Setting up openmpi-common (4.0.3-6ubuntu2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libfido2-1:armhf (1.5.0-2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.181-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.1) ... Setting up gcc-9-base:armhf (9.3.0-18ubuntu1) ... Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up libevent-extra-2.1-7:armhf (2.1.12-stable-1) ... Setting up libxcb1:armhf (1.14-2) ... Setting up libtool (2.4.6-14) ... Setting up libedit2:armhf (3.1-20191231-1) ... Setting up libevent-openssl-2.1-7:armhf (2.1.12-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libnuma-dev:armhf (2.0.12-1build1) ... Setting up libnl-route-3-200:armhf (3.4.0-1) ... Setting up libasan5:armhf (9.3.0-18ubuntu1) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up libnl-3-dev:armhf (3.4.0-1) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-9 (9.3.0-18ubuntu1) ... Setting up libx11-6:armhf (2:1.6.12-1) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:armhf (31.0-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up ibverbs-providers:armhf (31.0-1) ... Setting up openssh-client (1:8.3p1-1) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxnvctrl0:armhf (440.82-0ubuntu1) ... Setting up libgcc-9-dev:armhf (9.3.0-18ubuntu1) ... Setting up libnl-route-3-dev:armhf (3.4.0-1) ... Setting up libltdl-dev:armhf (2.4.6-14) ... Setting up libhwloc-dev:armhf (2.3.0+dfsg-2) ... Setting up gcc-9 (9.3.0-18ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libgfortran-9-dev:armhf (9.3.0-18ubuntu1) ... Setting up libibverbs-dev:armhf (31.0-1) ... Setting up libhwloc-plugins:armhf (2.3.0+dfsg-2) ... Setting up gfortran-9 (9.3.0-18ubuntu1) ... Setting up libpmix2:armhf (3.2.0-1) ... Setting up libopenmpi3:armhf (4.0.3-6ubuntu2) ... Setting up openmpi-bin (4.0.3-6ubuntu2) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:armhf (4.0.3-6ubuntu2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-zalign-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-121-generic arm64 (armv7l) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-15ubuntu1 gcc-10_10.2.0-15ubuntu1 gcc-9_9.3.0-18ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-15ubuntu1 libstdc++6_10.2.0-15ubuntu1 linux-libc-dev_5.8.0-25.26 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.0-6ubuntu2 binutils_2.35.1-2ubuntu1 binutils-arm-linux-gnueabihf_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-3ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-15ubuntu1 cpp-9_9.3.0-18ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-15ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-15ubuntu1 gcc-10-base_10.2.0-15ubuntu1 gcc-9_9.3.0-18ubuntu1 gcc-9-base_9.3.0-18ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gfortran-9_9.3.0-18ubuntu1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 ibverbs-providers_31.0-1 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0-0ubuntu2 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan5_9.3.0-18ubuntu1 libasan6_10.2.0-15ubuntu1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-15ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.1-2ubuntu1 libblkid1_2.36-3ubuntu1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu3 libc-dev-bin_2.32-0ubuntu3 libc6_2.32-0ubuntu3 libc6-dev_2.32-0ubuntu3 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcbor0.6_0.6.0-0ubuntu3 libcc1-0_10.2.0-15ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-2ubuntu1 libctf0_2.35.1-2ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.254ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libedit2_3.1-20191231-1 libelf1_0.181-1 libevent-2.1-7_2.1.12-stable-1 libevent-core-2.1-7_2.1.12-stable-1 libevent-dev_2.1.12-stable-1 libevent-extra-2.1-7_2.1.12-stable-1 libevent-openssl-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfido2-1_1.5.0-2 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-15ubuntu1 libgcc-9-dev_9.3.0-18ubuntu1 libgcc-s1_10.2.0-15ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran-9-dev_9.3.0-18ubuntu1 libgfortran5_10.2.0-15ubuntu1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-15ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhogweed6_3.6-2 libhwloc-dev_2.3.0+dfsg-2 libhwloc-plugins_2.3.0+dfsg-2 libhwloc15_2.3.0+dfsg-2 libibverbs-dev_31.0-1 libibverbs1_31.0-1 libicu67_67.1-4 libidn2-0_2.3.0-1 libip4tc2_1.8.5-3ubuntu1 libisl22_0.22.1-1 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 libltdl-dev_2.4.6-14 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libnuma-dev_2.0.12-1build1 libnuma1_2.0.12-1build1 libopenmpi-dev_4.0.3-6ubuntu2 libopenmpi3_4.0.3-6ubuntu2 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpciaccess0_0.16-1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpmix2_3.2.0-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu5 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ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 ocl-icd-libopencl1_2.2.12-4 openmpi-bin_4.0.3-6ubuntu2 openmpi-common_4.0.3-6ubuntu2 openssh-client_1:8.3p1-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.0-4 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-zalign-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-1ubuntu1 systemd-sysv_246.6-1ubuntu1 systemd-timesyncd_246.6-1ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Oct 16 07:45:28 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./zalign_0.9.1-5.dsc dpkg-source: info: extracting zalign in /<> dpkg-source: info: unpacking zalign_0.9.1.orig.tar.gz dpkg-source: info: unpacking zalign_0.9.1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20211381 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20211381 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20211381 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package zalign dpkg-buildpackage: info: source version 0.9.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:12: installing './compile' configure.in:11: installing './missing' src/Makefile.am:2: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') src/Makefile.am: installing './depcomp' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for memset... yes checking for mpic++... mpic++ checking for MPI_Init... yes checking for mpi.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignarray.o alignarray.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignbounds.o alignbounds.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o alignment.o alignment.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkalign.o blkalign.cpp In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/alignment.h:23, from alignment.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/alignbounds.h:23, from ../include/alignarray.h:25, from alignarray.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/alignbounds.h:23, from alignbounds.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/blkseq.h:23, from ../include/blkalign.h:26, from blkalign.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkborder.o blkborder.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkseq.o blkseq.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o blkstrat.o blkstrat.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o fastareader.o fastareader.cpp In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/blkseq.h:23, from ../include/blkborder.h:23, from blkborder.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/blkseq.h:23, from blkseq.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o linearfickettaligner.o linearfickettaligner.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialign.o mpialign.cpp In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/alignbounds.h:23, from ../include/alignarray.h:25, from ../include/blkstrat.h:25, from blkstrat.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/opt.h:23, from ../include/fastareader.h:26, from fastareader.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignmaster.o mpialignmaster.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o mpialignslave.o mpialignslave.cpp In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/alignment.h:23, from ../include/linearfickettaligner.h:27, from linearfickettaligner.cpp:25: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ linearfickettaligner.cpp: In member function ‘void LinearFickettAligner::initializeFickettTable()’: linearfickettaligner.cpp:78:14: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 78 | position_t i; | ^ linearfickettaligner.cpp: In member function ‘s_alignment* LinearFickettAligner::align()’: linearfickettaligner.cpp:237:14: warning: variable ‘minLen’ set but not used [-Wunused-but-set-variable] 237 | position_t minLen; | ^~~~~~ linearfickettaligner.cpp: In member function ‘s_alignment* LinearFickettAligner::traceback(position_t, position_t)’: linearfickettaligner.cpp:344:14: warning: variable ‘tlen’ set but not used [-Wunused-but-set-variable] 344 | position_t tlen; | ^~~~ In file included from linearfickettaligner.cpp:25: ../include/linearfickettaligner.h: In instantiation of ‘void LinearFickettAligner::LinearFickettTable::extendTable() [with T = int]’: ../include/linearfickettaligner.h:70:11: required from ‘void LinearFickettAligner::LinearFickettTable::reserve(count_t) [with T = int; count_t = unsigned int]’ linearfickettaligner.cpp:139:20: required from here ../include/linearfickettaligner.h:123:16: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 123 | size_t size; | ^~~~ ../include/linearfickettaligner.h: In instantiation of ‘void LinearFickettAligner::LinearFickettTable::extendTable() [with T = unsigned char]’: ../include/linearfickettaligner.h:70:11: required from ‘void LinearFickettAligner::LinearFickettTable::reserve(count_t) [with T = unsigned char; count_t = unsigned int]’ linearfickettaligner.cpp:142:26: required from here ../include/linearfickettaligner.h:123:16: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from mpialign.cpp:27: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from mpialignmaster.cpp:22: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/alignbounds.h:23, from mpialignslave.cpp:23: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o opt.o opt.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o score.o score.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o sequence.o sequence.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o limitsplotter.o limitsplotter.cpp mpic++ -DHAVE_CONFIG_H -I. -I.. -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -c -o zalign.o zalign.cpp In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/opt.h:23, from opt.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/sequence.h:23, from sequence.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/mpicxx.h:277, from /usr/lib/arm-linux-gnueabihf/openmpi/include/mpi.h:2868, from ../include/alignbounds.h:23, from ../include/zalign.h:31, from zalign.cpp:20: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h: In member function ‘virtual void MPI::Op::Init(void (*)(const void*, void*, int, const MPI::Datatype&), bool)’: /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:121:25: warning: cast between incompatible function types from ‘void (*)(void*, void*, int*, ompi_datatype_t**, void (*)(void*, void*, int*, ompi_datatype_t**))’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 121 | (void)MPI_Op_create((MPI_User_function*) ompi_mpi_cxx_op_intercept, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi/ompi/mpi/cxx/op_inln.h:123:38: warning: cast between incompatible function types from ‘void (*)(const void*, void*, int, const MPI::Datatype&)’ to ‘void (*)(void*, void*, int*, ompi_datatype_t**)’ [-Wcast-function-type] 123 | ompi_op_set_cxx_callback(mpi_op, (MPI_User_function*) func); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o /bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -lm -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o zalign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o limitsplotter.o linearfickettaligner.o opt.o score.o sequence.o zalign.o -lm libtool: link: mpic++ -g -O0 -ansi -pedantic -Wall -Wextra -Wno-long-long -Wno-unused-parameter -DHAVE_MPI_CPP -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/lib/openmpi/include -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o mpialign alignarray.o alignbounds.o alignment.o blkalign.o blkborder.o blkseq.o blkstrat.o fastareader.o linearfickettaligner.o mpialign.o mpialignmaster.o mpialignslave.o opt.o score.o sequence.o -lm make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/zalign AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/zalign/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c mpialign zalign '/<>/debian/zalign/usr/bin' libtool: install: /usr/bin/install -c mpialign /<>/debian/zalign/usr/bin/mpialign libtool: install: /usr/bin/install -c zalign /<>/debian/zalign/usr/bin/zalign make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dpkg-shlibdeps: warning: debian/zalign/usr/bin/zalign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/zalign/usr/bin/mpialign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing zalign (in debian/zalign); do_strip: , oemstrip: pkgstriptranslations: processing zalign-dbgsym (in debian/.debhelper/zalign/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/zalign/DEBIAN/control, package zalign, directory debian/zalign pkgstripfiles: Running PNG optimization (using 4 cpus) for package zalign ... pkgstripfiles: No PNG files. dpkg-deb: building package 'zalign' in '../zalign_0.9.1-5_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/zalign/dbgsym-root/DEBIAN/control, package zalign-dbgsym, directory debian/.debhelper/zalign/dbgsym-root dpkg-deb: building package 'zalign-dbgsym' in 'debian/.debhelper/scratch-space/build-zalign/zalign-dbgsym_0.9.1-5_armhf.deb'. Renaming zalign-dbgsym_0.9.1-5_armhf.deb to zalign-dbgsym_0.9.1-5_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../zalign_0.9.1-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-10-29T09:12:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ zalign_0.9.1-5_armhf.changes: ----------------------------- Format: 1.8 Date: Fri, 16 Oct 2020 09:43:09 +0200 Source: zalign Binary: zalign Architecture: armhf Version: 0.9.1-5 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: zalign - parallel local alignment of biological sequences Changes: zalign (0.9.1-5) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Repository, Repository-Browse. 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+------------------------------------------------------------------------------+ Format: 1.0 Source: zalign Binary: zalign zalign-dbgsym Architecture: armhf Version: 0.9.1-5 Checksums-Md5: 0b06b6c2bf5895ca081f7f725ef21137 167780 zalign-dbgsym_0.9.1-5_armhf.ddeb dfdfdeea4ec667ecfc523612ca5baef3 26316 zalign_0.9.1-5_armhf.deb Checksums-Sha1: bb9bf0fa8a1011520d6b20cd4ae73f75e6b9dc28 167780 zalign-dbgsym_0.9.1-5_armhf.ddeb 30466bb9054618db630e914ff6ea3e97962aac97 26316 zalign_0.9.1-5_armhf.deb Checksums-Sha256: 7f3404ed536fbad60a4cf91f5148f417021f6e12e9e835d74f3f6ef2d3cbe67e 167780 zalign-dbgsym_0.9.1-5_armhf.ddeb 0ac5c7e9950e49f4768e11d66581a1584f8c57b54b52ddafe9673159c58bfe2d 26316 zalign_0.9.1-5_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Thu, 29 Oct 2020 09:12:42 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu2), autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.0-6ubuntu2), binutils (= 2.35.1-2ubuntu1), binutils-arm-linux-gnueabihf (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-3ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-15ubuntu1), cpp-9 (= 9.3.0-18ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-15ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-15ubuntu1), gcc-10-base (= 10.2.0-15ubuntu1), gcc-9 (= 9.3.0-18ubuntu1), gcc-9-base (= 9.3.0-18ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), gfortran-9 (= 9.3.0-18ubuntu1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), ibverbs-providers (= 31.0-1), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan5 (= 9.3.0-18ubuntu1), libasan6 (= 10.2.0-15ubuntu1), libatomic1 (= 10.2.0-15ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu3), libc-dev-bin (= 2.32-0ubuntu3), libc6 (= 2.32-0ubuntu3), libc6-dev (= 2.32-0ubuntu3), libcap-ng0 (= 0.7.9-2.2), libcbor0.6 (= 0.6.0-0ubuntu3), libcc1-0 (= 10.2.0-15ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.254ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdpkg-perl (= 1.20.5ubuntu2), libedit2 (= 3.1-20191231-1), libelf1 (= 0.181-1), libevent-2.1-7 (= 2.1.12-stable-1), libevent-core-2.1-7 (= 2.1.12-stable-1), libevent-dev (= 2.1.12-stable-1), libevent-extra-2.1-7 (= 2.1.12-stable-1), libevent-openssl-2.1-7 (= 2.1.12-stable-1), libevent-pthreads-2.1-7 (= 2.1.12-stable-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfido2-1 (= 1.5.0-2), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-15ubuntu1), libgcc-9-dev (= 9.3.0-18ubuntu1), libgcc-s1 (= 10.2.0-15ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran-9-dev (= 9.3.0-18ubuntu1), libgfortran5 (= 10.2.0-15ubuntu1), libglib2.0-0 (= 2.66.1-2), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 10.2.0-15ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libhwloc-dev (= 2.3.0+dfsg-2), libhwloc-plugins (= 2.3.0+dfsg-2), libhwloc15 (= 2.3.0+dfsg-2), libibverbs-dev (= 31.0-1), libibverbs1 (= 31.0-1), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), libltdl-dev (= 2.4.6-14), libltdl7 (= 2.4.6-14), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnl-3-200 (= 3.4.0-1), libnl-3-dev (= 3.4.0-1), libnl-route-3-200 (= 3.4.0-1), libnl-route-3-dev (= 3.4.0-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnss-nis (= 3.1-0ubuntu4), libnss-nisplus (= 1.3-0ubuntu4), libnuma-dev (= 2.0.12-1build1), libnuma1 (= 2.0.12-1build1), libopenmpi-dev (= 4.0.3-6ubuntu2), libopenmpi3 (= 4.0.3-6ubuntu2), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpciaccess0 (= 0.16-1), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpmix2 (= 3.2.0-1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsemanage-common (= 3.1-1build1), libsemanage1 (= 3.1-1build1), libsepol1 (= 3.1-1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-15ubuntu1), libstdc++6 (= 10.2.0-15ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-1ubuntu1), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-15ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-1ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libxau6 (= 1:1.0.9-0ubuntu1), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxml2 (= 2.9.10+dfsg-6.1), libxnvctrl0 (= 440.82-0ubuntu1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-25.26), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), ocl-icd-libopencl1 (= 2.2.12-4), openmpi-bin (= 4.0.3-6ubuntu2), openmpi-common (= 4.0.3-6ubuntu2), openssh-client (= 1:8.3p1-1), passwd (= 1:4.8.1-1ubuntu6), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1602834189" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ zalign_0.9.1-5_armhf.deb ------------------------ new Debian package, version 2.0. size 26316 bytes: control archive=1172 bytes. 1057 bytes, 22 lines control 497 bytes, 8 lines md5sums Package: zalign Version: 0.9.1-5 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 97 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libopenmpi3 (>= 4.0.3), libstdc++6 (>= 4.9) Section: science Priority: optional Homepage: https://launchpad.net/zalign Description: parallel local alignment of biological sequences zAlign is a local sequence aligner, especially intended for use with large biological DNA sequences, with more than 1Mbp (Millions of base pairs). It uses the Smith-Waterman exact algorithm with affine gap cost function to perform this task. . zAlign can be used both in distributed (clusters, for example) or standalone environments. Currently it has been tested on Linux and Sun Solaris, using both the MPICH (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI (http://www.open-mpi.org/) implementations. Ports for other Unix-like environments are highly considered. drwxr-xr-x root/root 0 2020-10-16 07:43 ./ drwxr-xr-x root/root 0 2020-10-16 07:43 ./usr/ drwxr-xr-x root/root 0 2020-10-16 07:43 ./usr/bin/ -rwxr-xr-x root/root 42600 2020-10-16 07:43 ./usr/bin/mpialign -rwxr-xr-x root/root 38488 2020-10-16 07:43 ./usr/bin/zalign drwxr-xr-x root/root 0 2020-10-16 07:43 ./usr/share/ drwxr-xr-x root/root 0 2020-10-16 07:43 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-16 07:43 ./usr/share/doc/zalign/ -rw-r--r-- root/root 507 2009-08-16 21:14 ./usr/share/doc/zalign/NEWS.gz -rw-r--r-- root/root 1328 2009-08-16 18:49 ./usr/share/doc/zalign/README -rw-r--r-- root/root 483 2020-10-16 07:43 ./usr/share/doc/zalign/changelog.Debian.gz -rw-r--r-- root/root 1209 2020-10-16 07:43 ./usr/share/doc/zalign/copyright drwxr-xr-x root/root 0 2020-10-16 07:43 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-16 07:43 ./usr/share/man/man1/ -rw-r--r-- root/root 1002 2020-10-16 07:43 ./usr/share/man/man1/mpialign.1.gz -rw-r--r-- root/root 1001 2020-10-16 07:43 ./usr/share/man/man1/zalign.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 61 Distribution: hirsute-proposed Host Architecture: armhf Install-Time: 31 Job: zalign_0.9.1-5.dsc Machine Architecture: arm64 Package: zalign Package-Time: 95 Source-Version: 0.9.1-5 Space: n/a Status: successful Version: 0.9.1-5 -------------------------------------------------------------------------------- Finished at 2020-10-29T09:12:43Z Build needed 00:01:35, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=armhf PACKAGEBUILD-20211381 Scanning for processes to kill in build PACKAGEBUILD-20211381