Ubuntu
zalign package

zalign 0.9.1-1build1 source package in Ubuntu

Changelog

zalign (0.9.1-1build1) trusty; urgency=medium

  * No-change rebuild for libopenmpi1.3 -> libopenmpi1.6 transition.
 -- Logan Rosen <email address hidden>   Sat, 14 Dec 2013 23:13:47 -0500

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Uploaded by:
Logan Rosen
Uploaded to:
Trusty
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Trusty release universe misc

Downloads

File Size SHA-256 Checksum
zalign_0.9.1.orig.tar.gz 340.3 KiB 1b089fdb402fb4215c98c364dc44f35828ae6fe4434362dba5f71e033e1b1d33
zalign_0.9.1-1build1.debian.tar.gz 3.7 KiB 579e80dfd319c740cda43dc50f6fed54382a4fcfd793f4891eab45778bf91e1d
zalign_0.9.1-1build1.dsc 1.6 KiB 81b4a87839246c6bb4196ab95aadfc764a7b84d2f5d5cddfd1626651fda109f6

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Binary packages built by this source

zalign: parallel local alignment of biological sequences

 zAlign is a local sequence aligner, especially intended for use with
 large biological DNA sequences, with more than 1Mbp (Millions of base
 pairs). It uses the Smith-Waterman exact algorithm with affine gap cost
 function to perform this task.
 .
 zAlign can be used both in distributed (clusters, for
 example) or standalone environments. Currently it has
 been tested on Linux and Sun Solaris, using both the MPICH
 (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI
 (http://www.open-mpi.org/) implementations. Ports for other Unix-like
 environments are highly considered.