Ubuntu
wtdbg2 package

wtdbg2 2.5-8 source package in Ubuntu

Changelog

wtdbg2 (2.5-8) unstable; urgency=medium

  * Fix watchfile to detect new versions on github (routine-update)
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <email address hidden>  Wed, 01 Sep 2021 17:15:39 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Jammy release universe misc

Downloads

File Size SHA-256 Checksum
wtdbg2_2.5-8.dsc 2.0 KiB 82a36d23d7affe701f9080cb95690385904892cc561ccea1483c9e7a5af0cc34
wtdbg2_2.5.orig.tar.gz 231.1 KiB a2ffc8503d29f491a9a38ef63230d5b3c96db78377b5d25c91df511d0df06413
wtdbg2_2.5-8.debian.tar.xz 115.5 MiB 490bf3790b2f5f4fc7bc2ce04cd6c781c3f5278cf3fd21e312a491ac96d2918c

Available diffs

No changes file available.

Binary packages built by this source

wtdbg2: de novo sequence assembler for long noisy reads

 Wtdbg2 is a de novo sequence assembler for long noisy reads produced by
 PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads
 without error correction and then builds the consensus from intermediate
 assembly output. Wtdbg2 is able to assemble the human and even the 32Gb
 Axolotl genome at a speed tens of times faster than CANU and FALCON
 while producing contigs of comparable base accuracy.
 .
 During assembly, wtdbg2 chops reads into 1024bp segments, merges similar
 segments into a vertex and connects vertices based on the segment
 adjacency on reads. The resulting graph is called fuzzy Bruijn graph
 (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and
 keeps read paths when collapsing k-mers. The use of FBG distinguishes
 wtdbg2 from the majority of long-read assemblers.

wtdbg2-dbgsym: No summary available for wtdbg2-dbgsym in ubuntu kinetic.

No description available for wtdbg2-dbgsym in ubuntu kinetic.

wtdbg2-examples: Examples for wtdbg - de novo sequence assembler

 Wtdbg2 is a de novo sequence assembler for long noisy reads produced by
 PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads
 without error correction and then builds the consensus from intermediate
 assembly output. Wtdbg2 is able to assemble the human and even the 32Gb
 Axolotl genome at a speed tens of times faster than CANU and FALCON
 while producing contigs of comparable base accuracy.
 .
 This package contains a test data set as well as sample scripts
 running some test suite provided by Debian also as autopkgtest.