wise 2.4.1-21 source package in Ubuntu

Changelog

wise (2.4.1-21) unstable; urgency=medium

  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Long description for all packages
  * Drop unneeded Testsuite: autopkgtest

 -- Andreas Tille <email address hidden>  Thu, 04 Oct 2018 14:49:55 +0200

Upload details

Uploaded by:
Debian Med on 2018-10-04
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release on 2019-10-18 universe science
Eoan release on 2019-04-18 universe science
Disco release on 2018-11-11 universe science

Downloads

File Size SHA-256 Checksum
wise_2.4.1-21.dsc 2.1 KiB fe7c5a4df139ef62e7c6f88f918b7444dedcecd1f86331a529e843ef5ee0b26f
wise_2.4.1.orig.tar.gz 3.3 MiB 0aec5e30739110783517a429606249fc6c5fd0d65171c1a6d79ecc5ff81d2935
wise_2.4.1-21.debian.tar.xz 25.0 KiB 828c0f01b4b9d6219a51b008d6db56b33ff7bbcb388697c4b07ffad8d605d8a1

Available diffs

No changes file available.

Binary packages built by this source

wise: comparison of biopolymers, like DNA and protein sequences

 Wise2 is a package focused on comparisons of biopolymers, commonly DNA
 and protein sequences. There are many other packages which do
 this, probably the best known being BLAST package (from NCBI) and the
 Fasta package (from Bill Pearson). There are other packages, such as
 the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused
 on hidden Markov models (HMMs) of biopolymers.
 .
 Wise2's particular forte is the comparison of DNA sequence at the level
 of its protein translation. This comparison allows the simultaneous
 prediction of say gene structure with homology based alignment.
 .
 Wise2 also contains other algorithms, such as the venerable Smith-Waterman
 algorithm, or more modern ones such as Stephen Altschul's generalised
 gap penalties, or even experimental ones developed in house, such as
 dba. The development of these algorithms is due to the ease of developing
 such algorithms in the environment used by Wise2.
 .
 Wise2 has also been written with an eye for reuse and maintainability.
 Although it is a pure C package you can access its functionality
 directly in Perl. Parts of the package (or the entire package) can
 be used by other C or C++ programs without namespace clashes as all
 externally linked variables have the unique identifier Wise2 prepended.

wise-data: data files for the wise package

 Wise2 is a package focused on comparisons of biopolymers, commonly DNA
 and protein sequences. There are many other packages which do
 this, probably the best known being BLAST package (from NCBI) and the
 Fasta package (from Bill Pearson). There are other packages, such as
 the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused
 on hidden Markov models (HMMs) of biopolymers.
 .
 Wise2's particular forte is the comparison of DNA sequence at the level
 of its protein translation. This comparison allows the simultaneous
 prediction of say gene structure with homology based alignment.
 .
 Wise2 also contains other algorithms, such as the venerable Smith-Waterman
 algorithm, or more modern ones such as Stephen Altschul's generalised
 gap penalties, or even experimental ones developed in house, such as
 dba. The development of these algorithms is due to the ease of developing
 such algorithms in the environment used by Wise2.
 .
 Wise2 has also been written with an eye for reuse and maintainability.
 Although it is a pure C package you can access its functionality
 directly in Perl. Parts of the package (or the entire package) can
 be used by other C or C++ programs without namespace clashes as all
 externally linked variables have the unique identifier Wise2 prepended.
 .
 This package contains data files for Wise2, a package focused on
 comparisons of biopolymers, commonly DNA and protein sequences.

wise-dbgsym: debug symbols for wise
wise-doc: documentation for the wise package

 Wise2 is a package focused on comparisons of biopolymers, commonly DNA
 and protein sequences. There are many other packages which do
 this, probably the best known being BLAST package (from NCBI) and the
 Fasta package (from Bill Pearson). There are other packages, such as
 the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused
 on hidden Markov models (HMMs) of biopolymers.
 .
 Wise2's particular forte is the comparison of DNA sequence at the level
 of its protein translation. This comparison allows the simultaneous
 prediction of say gene structure with homology based alignment.
 .
 Wise2 also contains other algorithms, such as the venerable Smith-Waterman
 algorithm, or more modern ones such as Stephen Altschul's generalised
 gap penalties, or even experimental ones developed in house, such as
 dba. The development of these algorithms is due to the ease of developing
 such algorithms in the environment used by Wise2.
 .
 Wise2 has also been written with an eye for reuse and maintainability.
 Although it is a pure C package you can access its functionality
 directly in Perl. Parts of the package (or the entire package) can
 be used by other C or C++ programs without namespace clashes as all
 externally linked variables have the unique identifier Wise2 prepended.
 .
 This package contains the documentation for Wise2, a package focused on
 comparisons of biopolymers, commonly DNA and protein sequences.