wise 2.4.1-17 source package in Ubuntu


wise (2.4.1-17) unstable; urgency=medium

  * debian/tests/control: explicitly depend on wise.  This avoids that
    ‘sadt’ skips the test when wise-doc is not installed. 
  * debian/tests/run-unit-test: skip the first line of testman.pl, that
    misses a proper shebang and trigger a failure. 
  * debian/control: shorten synopsis to less than 72 characters.
  * Conforms with Policy 3.9.6.

 -- Charles Plessy <email address hidden>  Tue, 23 Sep 2014 20:14:47 +0900

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Uploaded by:
Debian Med on 2014-09-23
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Original maintainer:
Debian Med
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Medium Urgency

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Series Pocket Published Component Section
Xenial release on 2015-10-22 universe science


File Size SHA-256 Checksum
wise_2.4.1-17.dsc 2.2 KiB a498ff816c3fd5070d3059e7bf375d0bfed1ec818df9a3b7f7e0e5310ba0539d
wise_2.4.1.orig.tar.gz 3.3 MiB 0aec5e30739110783517a429606249fc6c5fd0d65171c1a6d79ecc5ff81d2935
wise_2.4.1-17.debian.tar.xz 21.4 KiB 453105445db50772c7b28b5767225b848a7950ef1db3075882ab61253b78cccb

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Binary packages built by this source

wise: comparison of biopolymers, like DNA and protein sequences

 Wise2 is a package focused on comparisons of biopolymers, commonly DNA
 and protein sequences. There are many other packages which do
 this, probably the best known being BLAST package (from NCBI) and the
 Fasta package (from Bill Pearson). There are other packages, such as
 the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused
 on hidden Markov models (HMMs) of biopolymers.
 Wise2's particular forte is the comparison of DNA sequence at the level
 of its protein translation. This comparison allows the simultaneous
 prediction of say gene structure with homology based alignment.
 Wise2 also contains other algorithms, such as the venerable Smith-Waterman
 algorithm, or more modern ones such as Stephen Altschul's generalised
 gap penalties, or even experimental ones developed in house, such as
 dba. The development of these algorithms is due to the ease of developing
 such algorithms in the environment used by Wise2.
 Wise2 has also been written with an eye for reuse and maintainability.
 Although it is a pure C package you can access its functionality
 directly in Perl. Parts of the package (or the entire package) can
 be used by other C or C++ programs without namespace clashes as all
 externally linked variables have the unique identifier Wise2 prepended.

wise-data: No summary available for wise-data in ubuntu yakkety.

No description available for wise-data in ubuntu yakkety.

wise-dbgsym: No summary available for wise-dbgsym in ubuntu yakkety.

No description available for wise-dbgsym in ubuntu yakkety.

wise-doc: No summary available for wise-doc in ubuntu vivid.

No description available for wise-doc in ubuntu vivid.