vienna-rna 2.6.4+dfsg-1 source package in Ubuntu
Changelog
vienna-rna (2.6.4+dfsg-1) unstable; urgency=medium
* Team upload
* New upstream version 2.6.4+dfsg (Closes: #1074158)
* Refreshing patches
* Updating d/copyright
* Updating the list of files to remove when repacking
* Building with --no-parallel to avoid some problems with missing files
during the build
* Building against swig/4.2.0
* Invoking python3 instead of python
* Correcting install paths for the python3 binary package
-- Pierre Gruet <email address hidden> Fri, 26 Jul 2024 10:18:54 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| vienna-rna_2.6.4+dfsg-1.dsc | 2.4 KiB | f87e80df6804d6bcc7adc17af5e3771bf303f49303202672eb3ba925c9b0e551 |
| vienna-rna_2.6.4+dfsg.orig.tar.xz | 11.3 MiB | 04347f95d61b08c05e4e2c6aba60c8db0bb75f3a35e2cf7731c463eb81645393 |
| vienna-rna_2.6.4+dfsg-1.debian.tar.xz | 20.6 KiB | 79151e624f72d552fa9d07db63bdc3423d1a5ea5b6ba65f047423118ac12d729 |
Available diffs
No changes file available.
Binary packages built by this source
- librna-perl: ViennaRNA perl wrappers
Perl wrappers above ViennaRNA library.
.
The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures
- python3-rna: ViennaRNA Python wrappers
Python wrappers above ViennaRNA library.
.
The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures
- python3-rna-dbgsym: debug symbols for python3-rna
- vienna-rna: RNA sequence analysis
The Vienna RNA Package consists of a C code library and several
stand-alone programs for the prediction and comparison of RNA secondary
structures. It is developed and maintained by the group of Ivo Hofacker
in Vienna.
.
RNA secondary structure prediction through energy minimization is the
most used function in the package. It provides three kinds of dynamic
programming algorithms for structure prediction:
* the minimum free energy algorithm of (Zuker & Stiegler 1981) which
yields a single optimal structure,
* the partition function algorithm of (McCaskill 1990) which calculates
base pair probabilities in the thermodynamic ensemble, and the
suboptimal folding algorithm of (Wuchty et.al 1999) which generates
all suboptimal structures within a given energy range of the optimal
energy.
.
For secondary structure comparison, the package contains several
measures of distance (dissimilarities) using either string alignment or
tree-editing (Shapiro & Zhang 1990). Finally, is provided an algorithm
to design sequences with a predefined structure (inverse folding).
The RNAforester package is a tool for aligning RNA secondary structures
and it's user interface integrates to those of the tools of the
Vienna RNA package.
- vienna-rna-dbgsym: debug symbols for vienna-rna
