vdjtools 1.2.1+git20190311+repack-1 source package in Ubuntu
Changelog
vdjtools (1.2.1+git20190311+repack-1) unstable; urgency=medium * Team upload. * New upstream version 1.2.1+git20190311+repack: - Repacking to remove the gradle directory and the gradlew script * Using javahelper for the build * Setting the classpath of the built jar * Revising the list of (build-)dependencies * Setting the Section of the -java package to non-free/java * Adding a Comment in d/copyright to explain why the package lies in non-free * Simplifying d/maven.rules * Removing unneeded files from the debian/ directory * Adding a header to the patch * Setting /bin/sh in the shebang of our provided shell script * Updating the list of dependencies in the patch * Using maven_repo_helper to provide Maven artifacts * Removing the flatDir directory in build.gradle to build with a proper classpath * Preventing gradle from shipping a fat jar with bundled dependencies [ Andreas Tille ] * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Pierre Gruet <email address hidden> Sun, 04 Dec 2022 07:17:24 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Mantic | release | multiverse | misc | |
Lunar | release | multiverse | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
vdjtools_1.2.1+git20190311+repack-1.dsc | 2.3 KiB | 4393b021b2453267e6ca19f1308dbc131fcbdd0c1ffacf1275f8f507bae13229 |
vdjtools_1.2.1+git20190311+repack.orig.tar.gz | 9.7 MiB | 31d5a17ee07163ec5926bdd5424a43d6f4295a201488843536b02b78ee6381c4 |
vdjtools_1.2.1+git20190311+repack-1.debian.tar.xz | 6.6 KiB | c239fb1ccd8232552e98de2a84da9ad82f01bc21555268f0afdd4c5fe6a3c09a |
Available diffs
No changes file available.
Binary packages built by this source
- libvdjtools-java: Java library of vdjtools
The VDJtools are interacting with the R statistics environment
to characterize the constitution of the immune repertoire
of B and T cells.
This package provides the Java library.
- vdjtools: framework for post-analysis of B/T cell repertoires
VDJtools is an open-source Java/Groovy-based framework designed
to facilitate analysis of immune repertoire sequencing (RepSeq)
data. VDJtools computes a wide set of statistics and is able to perform
various forms of cross-sample analysis. Both comprehensive tabular
output and publication-ready plots are provided.
.
The main aims of the VDJtools Project are:
.
* To ensure consistency between post-analysis methods and results
* To save the time of bioinformaticians analyzing RepSeq data
* To create an API framework facilitating development of new RepSeq
analysis applications
* To provide a simple enough command line tool so it could be used by
immunologists and biologists with little computational background