Ubuntu
vcfanno package

vcfanno 0.3.5+ds-2ubuntu0.24.04.1 source package in Ubuntu

Changelog

vcfanno (0.3.5+ds-2ubuntu0.24.04.1) noble-security; urgency=medium

  * No change rebuild due to golang-1.21 update

 -- Nishit Majithia <email address hidden>  Mon, 15 Jul 2024 13:49:26 +0530

Upload details

Uploaded by:
Nishit Majithia
Uploaded to:
Noble
Original maintainer:
Ubuntu Developers
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Noble updates universe misc
Noble security universe misc

Downloads

File Size SHA-256 Checksum
vcfanno_0.3.5+ds.orig.tar.xz 489.9 KiB eedbe0f9a04a9422d1b4e34a2fd625a1d07d009058999883fa4df1b725f2c8ff
vcfanno_0.3.5+ds-2ubuntu0.24.04.1.debian.tar.xz 2.2 MiB 100efb0927554fe43c6036fbc97374d12133be6c963ed49b93c0a0595e311703
vcfanno_0.3.5+ds-2ubuntu0.24.04.1.dsc 2.4 KiB 511f4649d3751e3307f62dee17565da850b1bbd930c57e73e7bdd76d48add433

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Binary packages built by this source

vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files

 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
     cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 Vcfanno is written in go and it supports custom user-scripts written in
 Lua. It can annotate more than 8000 variants per second with 34
 annotations from 9 files on a modest laptop and over 30K variants per
 second using 12 processes on a server.

vcfanno-dbgsym: debug symbols for vcfanno
vcfanno-examples: examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files

 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
     cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 This package contains a test data set as well as sample scripts
 running some test suite provided by Debian also as autopkgtest.