Ubuntu
vcfanno package

vcfanno 0.3.3+ds-1 source package in Ubuntu

Changelog

vcfanno (0.3.3+ds-1) unstable; urgency=medium

  * New upstream version 0.3.3+ds
  * Fix copyright with cme

 -- Nilesh Patra <email address hidden>  Tue, 02 Nov 2021 02:48:39 +0530

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Jammy release universe misc

Downloads

File Size SHA-256 Checksum
vcfanno_0.3.3+ds-1.dsc 2.4 KiB d04aed5666452d7af3e80c57f2b2808b9e1b23a487790a4f88b5fbcae244e242
vcfanno_0.3.3+ds.orig.tar.xz 489.8 KiB 85fd2b59de9be86454602a491ec8f8fdaa83951593fbac2938253f2677125994
vcfanno_0.3.3+ds-1.debian.tar.xz 2.2 MiB 47f87472ccbb04bfa1074bd700c7c19e1e57c88ed291197da419bf1c8678769c

No changes file available.

Binary packages built by this source

vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files

 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
     cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 Vcfanno is written in go and it supports custom user-scripts written in
 Lua. It can annotate more than 8000 variants per second with 34
 annotations from 9 files on a modest laptop and over 30K variants per
 second using 12 processes on a server.

vcfanno-dbgsym: No summary available for vcfanno-dbgsym in ubuntu kinetic.

No description available for vcfanno-dbgsym in ubuntu kinetic.

vcfanno-examples: examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files

 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
     cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 This package contains a test data set as well as sample scripts
 running some test suite provided by Debian also as autopkgtest.