Please update ugene to the latest version 1.5.2

Bug #486583 reported by Bhavani Shankar on 2009-11-22
8
This bug affects 1 person
Affects Status Importance Assigned to Milestone
ugene (Ubuntu)
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Bug Description

Binary package hint: ugene

Changes as mentioned in upstream website:-

Unipro UGENE v1.5.2 changes:
New plugins:

    * MUSCLE 4 - a port of the newest tool for multiple sequence alignment by Robert C. Edgar;
    * CUDA Support - an utility plugin which makes possible using NVIDIA graphical processing units for accelerating computational algorithms (Windows only).

New features and bug fixes:

    * CUDA-accelerated Smith-Waterman algorithm is ready to use for Windows users;
    * The one of the most awaited features: sequence editing has been added;
    * Primer 3 integration has been finished - a complete set of preferences is available now;
    * Exporting annotation tables to CSV has been provided;
    * New workers have been added to Workflow Designer: Sequence splitter and Remote request;
    * Collecting statistical reports feature has been added. See the dialog on the first launch of v1.5.2;
    * HMM2 models support has been added to HMM3;
    * Filtering by hits number has been added to enzymes search;
    * Now UGENE drops 'fantom' documents on project closing;
    * Bug with incorrect handling of sequence range selectors has been fixed in SSP dialog;
    * SSP algorithms, Primer3 and PDB parser now work correctly when launched in parallel;
    * A serious bug affecting Fedora users has been fixed in PSIPRED.

Related branches

Bhavani Shankar (bhavi) wrote :
Bhavani Shankar (bhavi) wrote :
Ivan Efremov (iefremov) wrote :

Successful PPA build is here, for jaunty: https://launchpad.net/~iefremov/+archive/ppa/+packages

Bhavani, please update copyright information according to
http://launchpadlibrarian.net/32177014/ugene_1.5.2%2Brepack-0ubuntu1~ppa1~jaunty1.diff.gz

Bhavani Shankar (bhavi) wrote :
Bhavani Shankar (bhavi) wrote :

Okay Ivan

Bhavani Shankar (bhavi) wrote :
Changed in ugene (Ubuntu):
status: New → Confirmed
madbiologist (me-again) wrote :

Did you want this for Karmic 9.10 or Lucid 10.04? Note that updates to the stable release (currently Karmic 9.10) are usually only approved for minor changes. This one may have too many new features and changes. However I'm not involved in making the decision. I suggest that you read the StableReleaseUpdates page at https://wiki.ubuntu.com/StableReleaseUpdates and take the steps outlined there as you feel is appropriate.

Bhavani Shankar (bhavi) wrote :

@Madbiologist:-

I m putting for review to get this package into lucid i.e 10.04 so no SRU problem :D

Regards

Changed in ugene (Ubuntu):
assignee: nobody → Fabrice Coutadeur (fabricesp)
importance: Undecided → Wishlist
status: Confirmed → In Progress
Fabrice Coutadeur (fabricesp) wrote :

Uploaded. thanks for your contribution! :-)

Changed in ugene (Ubuntu):
assignee: Fabrice Coutadeur (fabricesp) → nobody
status: In Progress → Fix Committed
Launchpad Janitor (janitor) wrote :

This bug was fixed in the package ugene - 1.5.2+repack-0ubuntu1

---------------
ugene (1.5.2+repack-0ubuntu1) lucid; urgency=low

  * New upstream release LP: #486583
  * Bump standards-version to 3.8.3. No other changes.
  * Update debian/copyright as per Ivan's suggestion.
 -- Bhavani Shankar <email address hidden> Sun, 22 Nov 2009 15:20:16 +0530

Changed in ugene (Ubuntu):
status: Fix Committed → Fix Released
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