Please update ugene to the latest version 1.5.2
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
| ugene (Ubuntu) |
Wishlist
|
Unassigned |
Bug Description
Binary package hint: ugene
Changes as mentioned in upstream website:-
Unipro UGENE v1.5.2 changes:
New plugins:
* MUSCLE 4 - a port of the newest tool for multiple sequence alignment by Robert C. Edgar;
* CUDA Support - an utility plugin which makes possible using NVIDIA graphical processing units for accelerating computational algorithms (Windows only).
New features and bug fixes:
* CUDA-accelerated Smith-Waterman algorithm is ready to use for Windows users;
* The one of the most awaited features: sequence editing has been added;
* Primer 3 integration has been finished - a complete set of preferences is available now;
* Exporting annotation tables to CSV has been provided;
* New workers have been added to Workflow Designer: Sequence splitter and Remote request;
* Collecting statistical reports feature has been added. See the dialog on the first launch of v1.5.2;
* HMM2 models support has been added to HMM3;
* Filtering by hits number has been added to enzymes search;
* Now UGENE drops 'fantom' documents on project closing;
* Bug with incorrect handling of sequence range selectors has been fixed in SSP dialog;
* SSP algorithms, Primer3 and PDB parser now work correctly when launched in parallel;
* A serious bug affecting Fedora users has been fixed in PSIPRED.
Related branches
Bhavani Shankar (bhavi) wrote : | #1 |
Bhavani Shankar (bhavi) wrote : | #2 |
Ivan Efremov (iefremov) wrote : | #3 |
Bhavani Shankar (bhavi) wrote : | #4 |
Bhavani Shankar (bhavi) wrote : | #5 |
Okay Ivan
madbiologist (me-again) wrote : | #7 |
Did you want this for Karmic 9.10 or Lucid 10.04? Note that updates to the stable release (currently Karmic 9.10) are usually only approved for minor changes. This one may have too many new features and changes. However I'm not involved in making the decision. I suggest that you read the StableReleaseUp
Bhavani Shankar (bhavi) wrote : | #8 |
@Madbiologist:-
I m putting for review to get this package into lucid i.e 10.04 so no SRU problem :D
Regards
Changed in ugene (Ubuntu): | |
assignee: | nobody → Fabrice Coutadeur (fabricesp) |
importance: | Undecided → Wishlist |
status: | Confirmed → In Progress |
Fabrice Coutadeur (fabricesp) wrote : | #9 |
Uploaded. thanks for your contribution! :-)
Changed in ugene (Ubuntu): | |
assignee: | Fabrice Coutadeur (fabricesp) → nobody |
status: | In Progress → Fix Committed |
Launchpad Janitor (janitor) wrote : | #10 |
This bug was fixed in the package ugene - 1.5.2+repack-
---------------
ugene (1.5.2+
* New upstream release LP: #486583
* Bump standards-version to 3.8.3. No other changes.
* Update debian/copyright as per Ivan's suggestion.
-- Bhavani Shankar <email address hidden> Sun, 22 Nov 2009 15:20:16 +0530
Changed in ugene (Ubuntu): | |
status: | Fix Committed → Fix Released |
Successful PPA build is here, for jaunty: https:/ /launchpad. net/~iefremov/ +archive/ ppa/+packages
Bhavani, please update copyright information according to launchpadlibrar ian.net/ 32177014/ ugene_1. 5.2%2Brepack- 0ubuntu1~ ppa1~jaunty1. diff.gz
http://