Ubuntu
trnascan-se package

trnascan-se 2.0.3-1 source package in Ubuntu

Changelog

trnascan-se (2.0.3-1) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * Upstream agreed to GPL the code here:
     https://lists.debian.org/debian-med/2018/09/msg00067.html

  [ Jeremy Bicha ]
  * Build-Depend on infernal to block the package being built on
    architectures where it's not available

  [ Steffen Moeller ]
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Secure URI in copyright format

 -- Andreas Tille <email address hidden>  Tue, 25 Sep 2018 07:38:08 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
trnascan-se_2.0.3-1.dsc 2.0 KiB 83c392b2283f7600fe32b77348d356ed154304f59e3f20c77521e6524fd6992e
trnascan-se_2.0.3.orig.tar.gz 4.2 MiB b305c1bf226d16833349b22ad1f3160a52ad30f577a336128da3cc76d5772a4e
trnascan-se_2.0.3-1.debian.tar.xz 6.3 KiB dfdc8e0892ed0a6cda5dde02f50348bc98a98bba0e14748524b6be3f6385b16b

No changes file available.

Binary packages built by this source

trnascan-se: detection of transfer RNA genes in genomic sequence

 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

trnascan-se-common: detection of transfer RNA genes in genomic sequence (common files)

 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
 .
 This package contains the architecture-independent common files.

trnascan-se-dbgsym: debug symbols for trnascan-se